Construct: ORF ccsbBroadEn_05923

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001632.1_s300c1, BRDN0000390733
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DDR1 (780)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 780 DDR1 discoidin domain receptor t... NM_001297652.1 99.8% 99.7% (many diffs)
2 human 780 DDR1 discoidin domain receptor t... NM_001297653.1 99.8% 99.7% (many diffs)
3 human 780 DDR1 discoidin domain receptor t... NM_001954.4 99.8% 99.7% (many diffs)
4 human 780 DDR1 discoidin domain receptor t... XM_017011269.2 99.1% 99% (many diffs)
5 human 780 DDR1 discoidin domain receptor t... NM_001202523.1 97.8% 97.7% (many diffs)
6 human 780 DDR1 discoidin domain receptor t... XM_011514888.3 97.1% 97.1% (many diffs)
7 human 780 DDR1 discoidin domain receptor t... NM_001297654.1 95.8% 95.7% (many diffs)
8 human 780 DDR1 discoidin domain receptor t... NM_013993.2 95.8% 95.7% (many diffs)
9 human 780 DDR1 discoidin domain receptor t... NM_013994.2 95.1% 95.1% (many diffs)
10 human 780 DDR1 discoidin domain receptor t... XM_011514883.2 95.1% 95.1% (many diffs)
11 human 780 DDR1 discoidin domain receptor t... XM_011514884.1 95.1% 95.1% (many diffs)
12 human 780 DDR1 discoidin domain receptor t... XM_011514885.2 95.1% 95.1% (many diffs)
13 human 780 DDR1 discoidin domain receptor t... XM_011514886.2 95.1% 95.1% (many diffs)
14 human 780 DDR1 discoidin domain receptor t... XM_011514887.2 95.1% 95.1% (many diffs)
15 human 780 DDR1 discoidin domain receptor t... XM_017011268.2 95.1% 95.1% (many diffs)
16 human 780 DDR1 discoidin domain receptor t... XM_024446540.1 95.1% 95.1% (many diffs)
17 human 780 DDR1 discoidin domain receptor t... XM_024446541.1 95.1% 95.1% (many diffs)
18 human 780 DDR1 discoidin domain receptor t... XM_024446542.1 95.1% 95.1% (many diffs)
19 human 780 DDR1 discoidin domain receptor t... XM_006715185.2 93.9% 93.8% (many diffs)
20 human 780 DDR1 discoidin domain receptor t... XM_011514882.2 93.3% 93.2% (many diffs)
21 human 780 DDR1 discoidin domain receptor t... NM_001202522.1 87.4% 85.6% (many diffs)
22 human 780 DDR1 discoidin domain receptor t... NM_001202521.1 57.6% 57.7% (many diffs)
23 mouse 12305 Ddr1 discoidin domain receptor f... NM_172962.1 87% 92.9% (many diffs)
24 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523538.3 87% 92.9% (many diffs)
25 mouse 12305 Ddr1 discoidin domain receptor f... NM_001198831.1 83.5% 89.1% (many diffs)
26 mouse 12305 Ddr1 discoidin domain receptor f... NM_001198833.1 83.5% 89.1% (many diffs)
27 mouse 12305 Ddr1 discoidin domain receptor f... NM_007584.2 83.5% 89.1% (many diffs)
28 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523533.1 83.5% 89.1% (many diffs)
29 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523534.1 83.5% 89.1% (many diffs)
30 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523535.3 83.5% 89.1% (many diffs)
31 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523536.3 83.5% 89.1% (many diffs)
32 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523537.1 83.5% 89.1% (many diffs)
33 mouse 12305 Ddr1 discoidin domain receptor f... XM_011246259.1 83.5% 89.1% (many diffs)
34 mouse 12305 Ddr1 discoidin domain receptor f... XR_001782030.1 59% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2694
ORF length:
2628
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG ACCAGAGGCC CTGTCATCTT TACTGCTGCT GCTCTTGGTG GCAAGTGGAG
121ATGCTGACAT GAAGGGACAT TTTGATCCTG CCAAGTGCCG CTATGCCCTG GGCATGCAGG
181ACCGGACCAT CCCAGACAGT GACATCTCTG CTTCCAGCTC CTGGTCAGAT TCCACTGCCG
241CCCGCCACAG CAGGTTGGAG AGCAGTGACG GGGATGGGGC CTGGTGCCCC GCAGGGTCGG
301TGTTTCCCAA GGAGGAGGAG TACTTGCAGG TGGATCTACA ACGACTGCAC CTGGTGGCTC
361TGGTGGGCAC CCAGGGACGG CATGCCGGGG GCCTGGGCAA GGAGTTCTCC CGGAGCTACC
421GGCTGCGTTA CTCCCGGGAT GGTCGCCGCT GGATGGGCTG GAAGGACCGC TGGGGTCAGG
481AGGTGATCTC AGGCAATGAG GACCCTGAGG GAGTGGTGCT GAAGGACCTT GGGCCCCCCA
541TGGTTGCCCG ACTGGTTCAC TTCTACCCCC GGGCTGACCG GGTCATGAGC GTCTGTCTGC
601GGGTAGAGCT CTATGGCTGC CTCTGGAGGG ATGGACTCCT GTCTTACACC GCCCCTGTGG
661GGCAGACAAT GTATTTATCT GAGGCCGTGT ACCTCAACGA CTCCACCTAT GACGGACATA
721CCGTGGGCGG ACTGCAGTAT GGGGGTCTGG GCCAGCTGGC AGATGGTGTG GTGGGGCTGG
781ATGACTTTAG GAAGAGTCAG GAGCTGCGGG TCTGGCCAGG CTATGACTAT GTGGGATGGA
841GCAACCACAG CTTCTCCAGT GGCTATGTGG AGATGGAGTT TGAGTTTGAC CGGCTGAGGG
901CCTTCCAGGC TATGCAGGTC CACTGTAACA ACATGCACAC GCTGGGAGCC CGTCTGCCTG
961GCGGGGTGGA ATGTCGCTTC CGGCGTGGCC CTGCCATGGC CTGGGAGGGG GAGCCCATGC
1021GCCACAACCT AGGGGGCAAC CTGGGGGACC CCAGAGCCCG GGCTGTCTCA GTGCCCCTTG
1081GCGGCCGTGT GGCTCGCTTT CTGCAGTGCC GCTTCCTCTT TGCGGGGCCC TGGTTACTCT
1141TCAGCGAAAT CTCCTTCATC TCTGATGTGG TGAACAATTC CTCTCCGGCA CTGGGAGGCA
1201CCTTCCCGCC AGCCCCCTGG TGGCCGCCTG GCCCACCTCC CACCAACTTC AGCAGCTTGG
1261AGCTGGAGCC CAGAGGCCAG CAGCCCGTGG CCAAGGCCGA GGGGAGCCCG ACCGCCATCC
1321TCATCGGCTG CCTGGTGGCC ATCATCCTGC TCCTGCTGCT CATCATTGCC CTCATGCTCT
1381GGCGGCTGCA CTGGCGCAGG CTCCTCAGCA AGGCTGAACG GAGGGTGTTG GAAGAGGAGC
1441TGACGGTTCA CCTCTCTGTC CCTGGGGACA CTATCCTCAT CAACAACCGC CCAGGTCCTA
1501GAGAGCCACC CCCGTACCAG GAGCCCCGGC CTCGTGGGAA TCCGCCCCAC TCTGCTCCCT
1561GTGTCCCCAA TGGCTCTGCC TACAGTGGGG ACTATATGGA GCCTGAGAAG CCAGGCGCCC
1621CGCTTCTGCC CCCACCTCCC CAGAACAGCG TCCCCCATTA TGCCGAGGCT GACATTGTTA
1681CCCTGCAGGG CGTCACCGGG GGCAACACCT ATGCTGTGCC TGCACTGCCC CCAGGGGCAG
1741TCGGGGATGG GCCCCCCAGA GTGGATTTCC CTCGATCTCG ACTCCGCTTC AAGGAGAAGC
1801TTGGCGAGGG CCAGTTTGGG GAGGTGCACC TGTGTGAGGT CGACAGCCCT CAAGATCTGG
1861TCAGTCTTGA TTTCCCCCTT AATGTGCGTA AGGGACACCC TTTGCTGGTA GCTGTCAAGA
1921TCTTACGGCC AGATGCCACC AAGAATGCCA GGAATGATTT CCTGAAAGAG GTGAAGATCA
1981TGTCGAGGCT CAAGGACCCA AACATCATTC GGCTGCTGGG CGTGTGTGTG CAGGACGACC
2041CCCTCTGCAT GATTACTGAC TACATGGAGA ACGGCGACCT CAACCAGTTC CTCAGTGCCC
2101ACCAGCTGGA GGACAAGGCA GCCGAGGGGG CCCCTGGGGA CGGGCAGGCT GCGCAGGGGC
2161CCACCATCAG CTACCAAATG CTGCTGCATG TGGCAGCCCA GATCGCCTCC GGCATGCGCT
2221ATCTGGCCAC ACTCAACTTT GTACATCGGG ACCTGGCCAC GCGGAACTGC CTAGTTGGGG
2281AAAATTTCAC CATCAAAATC GCAGACTTTG GCATGAGCCG GAACCTCTAT GCTGGGGACT
2341ATTACCGTGT GCAGGGCCGG GCAGTGCTGC CCATCCGCTG GATGGCCTGG GAGTGCATCC
2401TCATGGGGAA GTTCACGACT GCGAGTGACG TGTGGGCCTT TGGTGTGACC CTGTGGGAGG
2461TGCTGATGCT CTGTAGGGCC CAGCCCTTTG GGCAGCTCAC CGACGAGCAG GTCATCGAGA
2521ACGCGGGGGA GTTCTTCCGG GACCAGGGCC GGCAGGTGTA CCTGTCCCGG CCGCCTGCCT
2581GCCCGCAGGG CCTATATGAG CTGATGCTTC GGTGCTGGAG CCGGGAGTCT GAGCAGCGAC
2641CACCCTTTTC CCAGCTGCAT CGGTTCCTGG CAGAGGATGC ACTCAACACG GTGTGCCCAA
2701CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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