Construct: ORF ccsbBroadEn_06190
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014533.1_s300c1, BRDN0000386657
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FABP5 (2171)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2171 | FABP5 | fatty acid binding protein 5 | NM_001444.3 | 99.7% | 99.2% | 13C>G |
| 2 | human | 220832 | FABP5P3 | fatty acid binding protein ... | NR_002935.1 | 45.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 471
- ORF length:
- 405
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CACAGTTGAG CAGCTGGAAG GAAGATGGCG CCTGGTGGAC AGCAAAGGCT 121 TTGATGAATA CATGAAGGAG CTAGGAGTGG GAATAGCTTT GCGAAAAATG GGCGCAATGG 181 CCAAGCCAGA TTGTATCATC ACTTGTGATG GTAAAAACCT CACCATAAAA ACTGAGAGCA 241 CTTTGAAAAC AACACAGTTT TCTTGTACCC TGGGAGAGAA GTTTGAAGAA ACCACAGCTG 301 ATGGCAGAAA AACTCAGACT GTCTGCAACT TTACAGATGG TGCATTGGTT CAGCATCAGG 361 AGTGGGATGG GAAGGAAAGC ACAATAACAA GAAAATTGAA AGATGGGAAA TTAGTGGTGG 421 AGTGTGTCAT GAACAATGTC ACCTGTACTC GGATCTATGA AAAAGTAGAA TACCCAACTT 481 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac