Construct: ORF ccsbBroadEn_06221
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011534.1_s300c1, BRDN0000385178
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FPR1 (2357)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2357 | FPR1 | formyl peptide receptor 1 | NM_001193306.2 | 99.9% | 100% | 993C>T |
| 2 | human | 2357 | FPR1 | formyl peptide receptor 1 | NM_002029.3 | 99.9% | 100% | 993C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1116
- ORF length:
- 1050
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GACAAATTCC TCTCTCCCCA CGAACATCTC TGGAGGGACA CCTGCTGTAT 121 CTGCTGGCTA TCTCTTCCTG GATATCATCA CTTATCTGGT ATTTGCAGTC ACCTTTGTCC 181 TCGGGGTCCT GGGCAACGGG CTTGTGATCT GGGTGGCTGG ATTCCGGATG ACACACACAG 241 TCACCACCAT CAGTTACCTG AACCTGGCCG TGGCTGACTT CTGTTTCACC TCCACTTTGC 301 CATTCTTCAT GGTCAGGAAG GCCATGGGAG GACATTGGCC TTTCGGCTGG TTCCTGTGCA 361 AATTCGTCTT TACCATAGTG GACATCAACT TGTTCGGAAG TGTCTTCCTG ATCGCCCTCA 421 TTGCTCTGGA CCGCTGTGTT TGCGTCCTGC ATCCAGTCTG GACCCAGAAC CACCGCACCG 481 TGAGCCTGGC CAAGAAGGTG ATCATTGGGC CCTGGGTGAT GGCTCTGCTC CTCACATTGC 541 CAGTTATCAT TCGTGTGACT ACAGTACCTG GTAAAACGGG GACAGTAGCC TGCACTTTTA 601 ACTTTTCGCC CTGGACCAAC GACCCTAAAG AGAGGATAAA TGTGGCCGTT GCCATGTTGA 661 CGGTGAGAGG CATCATCCGG TTCATCATTG GCTTCAGCGC ACCCATGTCC ATCGTTGCTG 721 TCAGTTATGG GCTTATTGCC ACCAAGATCC ACAAGCAAGG CTTGATTAAG TCCAGTCGTC 781 CCTTACGGGT CCTCTCCTTT GTCGCAGCAG CCTTTTTTCT CTGCTGGTCC CCATATCAGG 841 TGGTGGCCCT TATAGCCACA GTCAGAATCC GTGAGTTATT GCAAGGCATG TACAAAGAAA 901 TTGGTATTGC AGTGGATGTG ACAAGTGCCC TGGCCTTCTT CAACAGCTGC CTCAACCCCA 961 TGCTCTATGT CTTCATGGGC CAGGACTTCC GGGAGAGGCT GATCCACGCC CTTCCCGCCA 1021 GTCTGGAGAG GGCCCTGACC GAGGACTCAA CCCAAACTAG TGACACAGCT ACCAATTCTA 1081 CTTTACCTTC TGCAGAGGTG GAGTTACAGG CAAAGTGCCC AACTTTCTTG TACAAAGTtg 1141 gcattataag aaagcattgc ttatcaattt gttgcaacga ac