Construct: ORF ccsbBroadEn_06396

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000506.1_s300c1, BRDN0000392759
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HOXD3 (3232)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3232 HOXD3 homeobox D3 NM_006898.5 99.9% 100% 1051T>C
2 human 3232 HOXD3 homeobox D3 XM_005246509.4 99.9% 100% 1051T>C
3 human 3232 HOXD3 homeobox D3 XM_005246511.4 99.9% 100% 1051T>C
4 human 3232 HOXD3 homeobox D3 XM_011511065.3 99.9% 100% 1051T>C
5 human 3232 HOXD3 homeobox D3 XM_011511066.3 99.9% 100% 1051T>C
6 mouse 15434 Hoxd3 homeobox D3 NM_010468.2 90.8% 95.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1362
ORF length:
1296
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT ATTTGAGCAG GGTCAGCAGG CCCTGGAGCT TCCTGAGTGC ACAATGCAGA
121AGGCTGCTTA CTATGAAAAC CCAGGACTGT TTGGAGGCTA TGGCTACAGC AAAACTACGG
181ACACTTACGG CTACAGCACC CCCCACCAGC CCTACCCACC CCCTGCTGCT GCCAGCTCCC
241TGGACACTGA CTATCCAGGT TCTGCCTGCT CCATCCAGAG CTCTGCCCCT CTGAGAGCCC
301CAGCCCACAA AGGAGCTGAA CTCAATGGCA GCTGCATGCG GCCGGGCACT GGGAACAGCC
361AGGGTGGGGG TGGTGGCAGC CAGCCTCCTG GTCTGAACTC AGAGCAGCAG CCACCACAAC
421CCCCTCCTCC ACCACCGACC CTGCCCCCAT CTTCACCCAC CAATCCTGGA GGTGGAGTGC
481CTGCCAAGAA GCCCAAAGGT GGGCCCAATG CTTCTAGCTC CTCAGCCACC ATCAGCAAGC
541AGATCTTCCC CTGGATGAAA GAGTCTCGAC AGAACTCCAA GCAGAAGAAC AGCTGTGCCA
601CTGCAGGAGA GAGCTGCGAG GACAAGAGCC CGCCAGGCCC AGCATCCAAG CGGGTACGCA
661CGGCATACAC GAGCGCGCAG CTGGTGGAAT TGGAAAAGGA ATTCCACTTC AACCGCTACT
721TGTGCCGGCC GCGCCGCGTG GAGATGGCCA ACCTGCTGAA TCTCACGGAA CGCCAGATCA
781AGATCTGGTT CCAGAACCGG CGCATGAAGT ACAAGAAGGA CCAGAAGGCC AAGGGCATCC
841TGCACTCGCC GGCTAGCCAG TCCCCTGAGC GCAGCCCACC GCTCGGCGGC GCCGCTGGCC
901ACGTGGCCTA CTCCGGCCAG CTGCCGCCAG TGCCCGGCCT GGCCTACGAC GCGCCCTCGC
961CGCCTGCTTT CGCCAAATCA CAGCCCAATA TGTACGGCCT GGCCGCCTAC ACGGCGCCAC
1021TCAGCAGCTG CCTGCCACAA CAGAAGCGCT ACGCAGCGCC GGAGTTCGAG CCCCATCCCA
1081TGGCGAGCAA CGGCGGCGGC TTCGCCAGCG CCAACCTGCA GGGCAGCCCG GTGTACGTGG
1141GCGGCAACTT CGTCGAGTCC ATGGCGCCCG CGTCCGGGCC TGTCTTCAAC CTGGGCCACC
1201TCTCGCACCC GTCGTCGGCC AGCGTGGACT ACAGTTGCGC CGCGCAGATT CCAGGCAACC
1261ACCACCATGG ACCTTGCGAC CCTCATCCCA CCTACACAGA TCTCTCGGCC CACCACTCGT
1321CTCAGGGACG ACTGCCGGAG GCTCCCAAAC TGACGCATCT GTACCCAACT TTCTTGTACA
1381AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)