Construct: ORF ccsbBroadEn_06465
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016095.1_s300c1, BRDN0000395779
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EIF6 (3692)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3692 | EIF6 | eukaryotic translation init... | NM_001267810.1 | 99.8% | 99.5% | 727A>C |
| 2 | human | 3692 | EIF6 | eukaryotic translation init... | NM_002212.4 | 99.8% | 99.5% | 727A>C |
| 3 | human | 3692 | EIF6 | eukaryotic translation init... | NM_181468.2 | 99.8% | 99.5% | 727A>C |
| 4 | human | 3692 | EIF6 | eukaryotic translation init... | NR_052023.2 | 68% | (many diffs) | |
| 5 | human | 3692 | EIF6 | eukaryotic translation init... | NM_181466.3 | 65.3% | 63.9% | 102_220del;310_311ins176;670A>C |
| 6 | human | 3692 | EIF6 | eukaryotic translation init... | NR_052022.2 | 52.1% | (many diffs) | |
| 7 | human | 3692 | EIF6 | eukaryotic translation init... | NR_052024.1 | 44.3% | (many diffs) | |
| 8 | mouse | 16418 | Eif6 | eukaryotic translation init... | NM_010579.2 | 91.1% | 97.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 801
- ORF length:
- 735
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGTCCGAGCT TCGTTCGAGA ACAACTGTGA GATCGGCTGC TTTGCCAAGC 121 TCACCAACAC CTACTGTCTG GTAGCGATCG GAGGCTCAGA GAACTTCTAC AGTGTGTTCG 181 AGGGCGAGCT CTCCGATACC ATCCCCGTGG TGCACGCGTC TATCGCCGGC TGCCGCATCA 241 TCGGGCGCAT GTGTGTGGGG AACAGGCACG GTCTCCTGGT ACCCAACAAT ACCACCGACC 301 AGGAGCTGCA ACACATTCGC AACAGCCTCC CAGACACAGT GCAGATTAGG CGGGTGGAGG 361 AGCGGCTCTC AGCCTTGGGC AATGTCACCA CCTGCAATGA CTACGTGGCC TTGGTCCACC 421 CAGACTTGGA CAGGGAGACA GAAGAAATTC TGGCAGATGT GCTCAAGGTG GAAGTCTTCA 481 GACAGACAGT GGCCGACCAG GTGCTAGTAG GAAGCTACTG TGTCTTCAGC AATCAGGGAG 541 GGCTGGTGCA TCCCAAGACT TCAATTGAAG ACCAGGATGA GCTGTCCTCT CTTCTTCAAG 601 TCCCCCTTGT GGCGGGGACT GTGAACCGAG GCAGTGAGGT GATTGCTGCT GGGATGGTGG 661 TGAATGACTG GTGTGCCTTC TGTGGCCTGG ACACAACCAG CACAGAGCTG TCAGTGGTGG 721 AGAGTGTCTT CAAGCTGAAT GAAGCCCAGC CTAGCACCAT TGCCACCAGC ATGCGGGATT 781 CCCTCATTGA CCGCCTCACC TGCCCCAACT TTCTTGTACA AAGTtggcat tataagaaag 841 cattgcttat caatttgttg caacgaac