Construct: ORF ccsbBroadEn_06679
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006909.1_s300c1, BRDN0000456278
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OXTR (5021)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5021 | OXTR | oxytocin receptor | NM_000916.3 | 99.8% | 100% | 171C>T;690C>T |
| 2 | human | 5021 | OXTR | oxytocin receptor | NM_001354653.1 | 99.8% | 100% | 171C>T;690C>T |
| 3 | human | 5021 | OXTR | oxytocin receptor | NM_001354654.1 | 99.8% | 100% | 171C>T;690C>T |
| 4 | human | 5021 | OXTR | oxytocin receptor | NM_001354655.1 | 99.8% | 100% | 171C>T;690C>T |
| 5 | human | 5021 | OXTR | oxytocin receptor | NM_001354656.2 | 99.8% | 100% | 171C>T;690C>T |
| 6 | mouse | 18430 | Oxtr | oxytocin receptor | NM_001081147.1 | 86.8% | 92% | (many diffs) |
| 7 | mouse | 18430 | Oxtr | oxytocin receptor | XM_006505723.1 | 86.8% | 92% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1236
- ORF length:
- 1167
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGGGCGCG CTCGCAGCCA ACTGGAGCGC CGAGGCAGCC AACGCCAGCG 121 CCGCGCCGCC GGGGGCCGAG GGCAACCGCA CCGCCGGACC CCCGCGGCGC AACGAGGCCC 181 TGGCGCGCGT GGAGGTGGCG GTGCTGTGTC TCATCCTGCT CCTGGCGCTG AGCGGGAATG 241 CGTGTGTGCT GCTGGCGCTG CGCACCACAC GCCAGAAGCA CTCGCGCCTC TTCTTCTTCA 301 TGAAGCACCT AAGCATCGCC GACCTGGTGG TGGCAGTGTT TCAGGTGCTG CCGCAGTTGC 361 TGTGGGACAT CACCTTCCGC TTCTACGGGC CCGACCTGCT GTGCCGCCTG GTCAAGTACT 421 TGCAGGTGGT GGGCATGTTC GCCTCCACCT ACCTGCTGCT GCTCATGTCC CTGGACCGCT 481 GCCTGGCCAT CTGCCAGCCG CTGCGCTCGC TGCGCCGCCG CACCGACCGC CTGGCAGTGC 541 TCGCCACGTG GCTCGGCTGC CTGGTGGCCA GCGCGCCGCA GGTGCACATC TTCTCTCTGC 601 GCGAGGTGGC TGACGGCGTC TTCGACTGCT GGGCCGTCTT CATCCAGCCC TGGGGACCCA 661 AGGCCTACAT CACATGGATC ACGCTAGCTG TCTACATCGT GCCGGTCATC GTGCTCGCTG 721 CCTGCTACGG CCTTATCAGC TTCAAGATCT GGCAGAATTT GCGGCTCAAG ACCGCTGCAG 781 CGGCGGCGGC CGAGGCGCCA GAGGGCGCGG CGGCTGGCGA TGGGGGGCGC GTGGCCCTGG 841 CGCGTGTCAG CAGCGTCAAG CTCATCTCCA AGGCCAAGAT CCGCACGGTC AAGATGACTT 901 TCATCATCGT GCTGGCCTTC ATCGTGTGCT GGACGCCTTT CTTCTTCGTG CAGATGTGGA 961 GCGTCTGGGA TGCCAACGCG CCCAAGGAAG CCTCGGCCTT CATCATCGTC ATGCTCCTGG 1021 CCAGCCTCAA CAGCTGCTGC AACCCCTGGA TCTACATGCT GTTCACGGGC CACCTCTTCC 1081 ACGAACTCGT GCAGCGCTTC CTGTGCTGCT CCGCCAGCTA CCTGAAGGGC AGACGCCTGG 1141 GAGAGACGAG TGCCAGCAAA AAGAGCAACT CGTCCTCCTT TGTCCTGAGC CATCGCAGCT 1201 CCAGCCAGAG GAGCTGCTCC CAGCCATCCA CGGCGTTGCC AACTTTCTTG TACAAAGTTG 1261 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac