Construct: ORF ccsbBroadEn_06925
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008041.1_s300c1, BRDN0000393982
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SDC2 (6383)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6383 | SDC2 | syndecan 2 | NM_002998.4 | 99.8% | 99.5% | 211T>A |
| 2 | human | 6383 | SDC2 | syndecan 2 | XM_011517212.3 | 85.4% | 85% | 0_1ins87;124T>A |
| 3 | human | 6383 | SDC2 | syndecan 2 | XM_024447228.1 | 85.4% | 85% | 0_1ins87;124T>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 669
- ORF length:
- 603
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG GCGCGCGTGG ATCCTGCTCA CCTTGGGCTT GGTGGCCTGC GTGTCGGCGG 121 AGTCGAGAGC AGAGCTGACA TCTGATAAAG ACATGTACCT TGACAACAGC TCCATTGAAG 181 AAGCTTCAGG AGTGTATCCT ATTGATGACG ATGACTACGC TTCTGCGTCT GGCTCGGGAG 241 CTGATGAGGA TGTAGAGAGT CCAGAGCTGA CAACAACTCG ACCACTTCCA AAGATACTGT 301 TGACTAGTGC TGCTCCAAAA GTGGAAACCA CGACGCTGAA TATACAGAAC AAGATACCTG 361 CTCAGACAAA GTCACCTGAA GAAACTGATA AAGAGAAAGT TCACCTCTCT GACTCAGAAA 421 GGAAAATGGA CCCAGCCGAA GAGGATACAA ATGTGTATAC TGAGAAACAC TCAGACAGTC 481 TGTTTAAACG GACAGAAGTC CTAGCAGCTG TCATTGCTGG TGGAGTTATT GGCTTTCTCT 541 TTGCAATTTT TCTTATCCTG CTGTTGGTGT ATCGCATGAG AAAGAAGGAT GAAGGAAGCT 601 ATGACCTTGG AGAACGCAAA CCATCCAGTG CTGCTTATCA GAAGGCACCT ACTAAGGAGT 661 TTTATGCGTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 721 tttgttgcaa cgaac