Construct: ORF ccsbBroadEn_07011

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011287.1_s300c1, BRDN0000393546
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
SULT1E1 (6783)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6783 SULT1E1 sulfotransferase family 1E ... NM_005420.3 99.7% 2.3% 24T>A;460T>C
2 human 6783 SULT1E1 sulfotransferase family 1E ... XM_011532210.2 56.3% 3.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
87
ORF length:
21
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TTCTGAACTT GACTATTAAG AAAAGTTTGA AGAAGTCCAT GGGATTCTAA
121TGTATAAAGA TTTTGTCAAA TATTGGGATA ATGTGGAAGC GTTCCAGGCA AGACCAGATG
181ATCTTGTCAT TGCCACCTAC CCTAAATCTG GTACAACCTG GGTTAGTGAA ATTGTGTATA
241TGATCTATAA AGAGGGTGAT GTGGAAAAGT GCAAAGAAGA TGTAATTTTT AATCGAATAC
301CTTTCCTGGA ATGCAGAAAA GAAAACCTCA TGAATGGAGT AAAACAATTA GATGAGATGA
361ATTCTCCTAG AATTGTGAAG ACTCATTTGC CACCTGAACT TCTTCCTGCC TCATTTTGGG
421AAAAGGATTG TAAGATAATC TATCTTTGCC GGAATGCAAA GGATGTGGCT GTTTCCTTTT
481ATTATTTCTT TCTAATGGTG GCTGGTCATC CAAATCCTGG ATCCCTTCCA GAGTTTGTGG
541AGAAATTCAT GCAAGGACAG GTTCCTTATG GTTCCTGGTA TAAACATGTA AAATCTTGGT
601GGGAAAAGGG AAAGAGTCCA CGTGTACTAT TTCTTTTCTA CGAAGACCTG AAAGAGGATA
661TCAGAAAAGA GGTGATAAAA TTGATACATT TCCTGGAAAG GAAGCCATCA GAGGAGCTTG
721TGGACAGGAT TATACATCAT ACTTCGTTCC AAGAGATGAA GAACAATCCA TCCACAAATT
781ACACAACACT GCCAGACGAA ATTATGAACC AGAAATTGTC GCCCTTCATG AGAAAGGGAA
841TTACAGGAGA CTGGAAAAAT CACTTTACAG TAGCCCTGAA TGAAAAATTT GATAAACATT
901ATGAGCAGCA AATGAAGGAA TCTACACTGA AGTTTCGAAC TGAGATCTAC CCAACTTTCT
961TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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