Construct: ORF ccsbBroadEn_07150
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001530.1_s300c1, BRDN0000457053
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF12 (7559)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7559 | ZNF12 | zinc finger protein 12 | NM_016265.4 | 99.9% | 99.8% | 14T>N |
| 2 | human | 7559 | ZNF12 | zinc finger protein 12 | NM_006956.3 | 94.5% | 94.4% | 14T>N;338_339ins114 |
| 3 | mouse | 231866 | Zfp12 | zinc finger protein 12 | XM_011240980.2 | 53.4% | 58.8% | (many diffs) |
| 4 | mouse | 231866 | Zfp12 | zinc finger protein 12 | XM_011240981.2 | 53.4% | 58.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2160
- ORF length:
- 2091
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAATAAATCC CNGGGGCCAG TGTCATTCAA GGACGTGGCT GTGGACTTCA 121 CCCAGGAGGA ATGGCAGCAG CTGGATCCTG AGCAGAAGAT AACTTACAGG GATGTGATGC 181 TGGAGAACTA CAGCAATCTA GTTTCTGTGG GGTATCACAT TATCAAACCG GATGTTATCA 241 GCAAGTTGGA GCAAGGAGAA GAGCCATGGA TAGTAGAAGG AGAATTCCTA CTTCAGAGCT 301 ATCCAGATGA AGTCTGGCAA ACTGATGACC TAATAGAGAG AATCCAGGAA GAGGAAAATA 361 AACCTTCAAG GCAAACTGTG TTCATTGAGA CCCTGATTGA AGAGAGAGGT AATGTTCCTG 421 GTAAAACTTT TGATGTAGAA ACGAACCCTG TTCCTTCAAG AAAAATAGCC TATAAAAATA 481 GCCTCTGTGA CTCATGTGAA AAGTGTTTAA CGTCTGTTTC AGAATATATT AGTAGTGATG 541 GAAGCTATGC AAGAATGAAA GCTGATGAAT GTAGTGGATG TGGGAAATCA CTCCTCCATA 601 TTAAGCTTGA GAAAACTCAT CCAGGAGATC AAGCTTATGA ATTTAATCAA AATGGGGAAC 661 CTTATACTCT AAATGAAGAA AGTCTTTATC AGAAAATTCG TATTTTGGAG AAACCTTTTG 721 AATATATTGA ATGCCAGAAA GCCTTCCAAA AGGACACTGT TTTTGTTAAT CACATGGAAG 781 AAAAGCCCTA TAAGTGGAAT GGATCTGAAA TAGCCTTTCT CCAGATGTCG GACCTCACTG 841 TACATCAGAC ATCTCATATG GAAATGAAGC CCTATGAATG CAGTGAATGT GGGAAATCCT 901 TCTGTAAAAA GTCAAAATTT ATTATACATC AGAGGACTCA CACAGGAGAG AAACCTTACG 961 AATGTAATCA GTGTGGGAAA TCCTTCTGCC AGAAGGGAAC CCTTACTGTG CATCAGAGAA 1021 CACACACAGG GGAGAAGCCC TATGAATGTA ATGAATGTGG GAAGAACTTT TACCAGAAGT 1081 TACACCTCAT TCAGCATCAG AGAACTCACT CAGGAGAGAA GCCCTATGAA TGTAGTTATT 1141 GTGGAAAATC CTTTTGCCAG AAGACACACC TCACACAACA TCAGAGAACA CATTCAGGAG 1201 AGAGACCTTA TGTTTGTCAT GACTGTGGGA AAACCTTCTC GCAGAAGTCA GCACTTAATG 1261 ACCATCAGAA AATTCACACA GGTGTGAAAC TCTACAAGTG TAGTGAATGT GGGAAATGCT 1321 TCTGCCGCAA GTCTACTCTC ACGACCCACC TGAGGACCCA CACAGGAGAG AAACCGTATG 1381 AATGTAATGA GTGTGGAAAA TTCTTCTCTC GGTTGTCATA TCTCACTGTA CATTATAGAA 1441 CTCATTCAGG AGAGAAACCC TATGAATGTA ATGAATGTGG AAAAACCTTC TACCTGAATT 1501 CAGCCCTCAT GAGACATCAG AGAGTGCACA CAGGAGAGAA ACCTTACGAA TGTAATGAAT 1561 GTGGAAAGTT ATTCTCCCAG TTGTCATACC TCACTATCCA TCATAGAACT CATTCAGGAG 1621 TAAAACCCTA TGAATGTAGT GAATGTGGGA AAACCTTCTA CCAGAACTCA GCCCTTTGTA 1681 GACATCGGAG AATACACAAA GGAGAGAAGC CCTATGAATG CTATATATGT GGAAAATTCT 1741 TCTCTCAGAT GTCATACCTC ACTATACATC ATAGAATTCA TTCAGGAGAG AAGCCCTATG 1801 AATGTAGTGA ATGTGGGAAA ACCTTCTGCC AGAATTCAGC CCTTAATCGA CATCAGAGAA 1861 CACACACAGG AGAGAAAGCC TACGAATGTT ATGAATGTGG GAAGTGCTTC TCTCAGATGT 1921 CCTATCTCAC TATACATCAT CGAATTCATT CAGGAGAGAA ACCCTTTGAA TGTAATGAGT 1981 GTGGAAAAGC CTTCTCTCGG ATGTCATACC TCACTGTACA TTATAGAACT CATTCAGGAG 2041 AGAAACCCTA TGAGTGTACT GAATGTGGAA AAAAATTCTA CCACAAATCA GCATTCAACA 2101 GCCATCAGAG AATTCATAGG AGAGGCAATA TGAATGTAAT AGATGTGGGA AGGCTTCTCT 2161 TGCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca 2221 acgaac