Construct: ORF ccsbBroadEn_07373
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001933.1_s300c1, BRDN0000392837
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC16A7 (9194)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9194 | SLC16A7 | solute carrier family 16 me... | NM_001270622.2 | 99.9% | 99.7% | 10A>G |
| 2 | human | 9194 | SLC16A7 | solute carrier family 16 me... | NM_001270623.2 | 99.9% | 99.7% | 10A>G |
| 3 | human | 9194 | SLC16A7 | solute carrier family 16 me... | NM_004731.5 | 99.9% | 99.7% | 10A>G |
| 4 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_005269231.4 | 99.9% | 99.7% | 10A>G |
| 5 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_024449276.1 | 99.9% | 99.7% | 10A>G |
| 6 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_011538989.2 | 94.7% | 94.6% | 10A>G;216_293del |
| 7 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_011538990.3 | 94.7% | 94.6% | 10A>G;216_293del |
| 8 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_011538991.2 | 94.7% | 94.6% | 10A>G;216_293del |
| 9 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_011538992.2 | 94.7% | 94.6% | 10A>G;216_293del |
| 10 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_011538993.3 | 79.2% | 79.2% | 0_1ins297 |
| 11 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_011538995.2 | 79.2% | 79.2% | 0_1ins297 |
| 12 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_017020224.1 | 79.2% | 79.2% | 0_1ins297 |
| 13 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_017020225.1 | 79.2% | 79.2% | 0_1ins297 |
| 14 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_017020226.2 | 79.2% | 79.2% | 0_1ins297 |
| 15 | human | 9194 | SLC16A7 | solute carrier family 16 me... | XM_017020227.1 | 79.2% | 79.2% | 0_1ins297 |
| 16 | human | 9194 | SLC16A7 | solute carrier family 16 me... | NR_073056.2 | 12% | (many diffs) | |
| 17 | human | 9194 | SLC16A7 | solute carrier family 16 me... | NR_073055.2 | 11.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1500
- ORF length:
- 1434
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC ACCAGTGCCA AGTGCCCCAC CTGTGCATCC ACCTCCAGAT GGAGGATGGG 121 GTTGGATTGT GGTTGGAGCA GCTTTTATCT CCATTGGATT TTCCTATGCA TTCCCCAAAG 181 CTGTCACCGT ATTCTTCAAA GAAATTCAGC AAATATTCCA CACTACCTAC AGTGAAATAG 241 CATGGATTTC ATCCATTATG CTGGCTGTTA TGTACGCAGG AGGTCCTGTA AGTAGTGTTT 301 TGGTGAATAA ATACGGCAGC CGGCCGGTGG TGATAGCAGG AGGCTTATTA TGCTGTCTTG 361 GAATGGTGTT GGCCTCCTTT AGTAGCAGCG TGGTACAGCT GTACCTCACT ATGGGATTCA 421 TTACAGGTTT AGGTTTAGCC TTCAACCTGC AACCCGCCTT AACCATAATT GGCAAATACT 481 TCTATAGGAA GCGACCCATG GCAAATGGAT TGGCCATGGC AGGAAGTCCT GTTTTCTTAA 541 GTTCATTGGC TCCTTTCAAT CAGTACCTTT TTAATACTTT TGGCTGGAAA GGAAGCTTCC 601 TGATTTTGGG AAGTCTACTT TTGAATGCCT GTGTGGCTGG TTCCCTCATG AGACCCCTTG 661 GACCCAATCA AACCACTTCT AAGTCTAAAA ATAAGACTGG CAAAACAGAA GATGATTCAA 721 GCCCAAAGAA AATCAAAACG AAGAAATCAA CTTGGGAAAA AGTTAATAAG TATTTAGATT 781 TCTCCCTTTT TAAGCATAGA GGATTTCTGA TATATCTGTC TGGAAATGTC ATTATGTTCC 841 TAGGTTTTTT TGCCCCCATT ATATTCTTGG CTCCATATGC TAAAGACCAA GGAATTGATG 901 AGTACTCGGC AGCTTTTCTG CTATCTGTTA TGGCTTTCGT TGATATGTTT GCTAGGCCTT 961 CTGTAGGATT AATTGCAAAC TCCAAATATA TTCGACCTCG AATTCAGTAC TTCTTCAGTT 1021 TTGCAATCAT GTTCAATGGA GTGTGTCACC TCTTGTGCCC ACTGGCACAG GACTACACAA 1081 GCCTGGTATT ATATGCTGTA TTTTTTGGCC TTGGATTTGG GAGTGTTAGC AGTGTTCTCT 1141 TTGAAACTCT CATGGACCTC GTGGGTGCAC CAAGATTTTC CAGTGCCGTC GGACTTGTCA 1201 CAATTGTGGA GTGTGGCCCA GTTCTTCTTG GCCCTCCTCT TGCAGGTAAA TTGGTGGATT 1261 TAACTGGAGA ATATAAATAC ATGTACATGT CCTGTGGGGC TATTGTGGTA GCAGCAAGCG 1321 TGTGGCTGCT CATTGGCAAT GCTATCAACT ATAGATTGCT TGCAAAGGAA AGGAAGGAGG 1381 AAAATGCAAG GCAGAAGACC AGAGAATCTG AACCCTTGAG CAAATCTAAA CATTCGGAAG 1441 ATGTTAACGT CAAAGTTTCA AATGCACAGA GTGTAACCTC AGAAAGAGAA ACTAACATTT 1501 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1561 acgaac