Construct: ORF ccsbBroadEn_07434
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017516.1_s300c1, BRDN0000387124
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FXR2 (9513)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9513 | FXR2 | FMR1 autosomal homolog 2 | NM_004860.4 | 99.9% | 99.8% | 756G>T |
| 2 | human | 9513 | FXR2 | FMR1 autosomal homolog 2 | XR_243572.2 | 73.1% | (many diffs) | |
| 3 | mouse | 23879 | Fxr2 | fragile X mental retardatio... | NM_011814.2 | 90.9% | 97.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2085
- ORF length:
- 2019
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CGGCCTGGCC TCTGGGGGGG ATGTGGAGCC GGGACTGCCC GTCGAGGTGC 121 GCGGCTCCAA CGGGGCCTTC TACAAGGGCT TTGTGAAGGA TGTCCATGAA GACTCTGTCA 181 CCATCTTCTT TGAAAACAAC TGGCAGAGTG AGAGACAAAT TCCTTTTGGG GATGTCCGGC 241 TACCACCTCC AGCTGACTAT AATAAGGAGA TCACAGAAGG GGATGAAGTG GAGGTTTATT 301 CTCGAGCCAA TGAACAGGAA CCTTGTGGCT GGTGGCTGGC CCGGGTGCGG ATGATGAAGG 361 GAGATTTCTA TGTCATTGAA TATGCTGCCT GTGATGCCAC CTACAATGAA ATTGTTACCC 421 TGGAGCGACT TCGGCCAGTT AATCCCAATC CCCTTGCAAC CAAAGGCAGC TTCTTCAAGG 481 TTACCATGGC TGTGCCCGAG GATCTGAGAG AAGCCTGCTC CAATGAAAAC GTCCATAAAG 541 AGTTCAAGAA AGCCCTGGGA GCCAACTGCA TCTTTCTCAA CATCACAAAC AGTGAGCTCT 601 TCATTCTGTC AACCACAGAA GCCCCTGTGA AGCGAGCATC TCTGCTGGGT GATATGCATT 661 TCCGAAGCCT GCGCACCAAA CTGCTACTTA TGTCCCGCAA TGAAGAAGCT ACCAAGCACC 721 TAGAGACAAG CAAGCAGTTG GCAGCAGCCT TCCAAGAGGA GTTCACAGTG CGAGAGGACC 781 TGATGGGACT GGCAATTGGG ACTCACGGTG CCAACATCCA TCAGGCCCGA AAAGTACCTG 841 GGGTGACCGC CATTGAGTTG GGTGAAGAGA CCTGCACTTT CCGCATCTAT GGGGAGACTC 901 CCGAGGCTTG CCGACAGGCC CGAAGCTACC TTGAGTTTTC TGAGGACTCA GTGCAAGTGC 961 CCAGGAACCT GGTTGGCAAA GTGATTGGAA AGAACGGGAA AGTGATCCAG GAGATTGTGG 1021 ATAAATCTGG TGTGGTGAGG GTTCGAGTGG AAGGTGATAA TGACAAGAAG AACCCCAGGG 1081 AGGAGGGAAT GGTTCCCTTC ATTTTTGTTG GCACCCGAGA GAACATCAGC AATGCCCAGG 1141 CTTTGCTGGA GTATCACCTC TCCTACCTGC AGGAGGTAGA GCAGCTTCGC TTGGAGAGGC 1201 TACAAATTGA TGAGCAGCTT CGGCAGATTG GGCTGGGCTT TCGCCCTCCT GGGAGTGGGC 1261 GGGGCAGCGG TGGCAGCGAC AAGGCTGGAT ATAGCACTGA TGAGAGCTCC TCCTCCTCCC 1321 TCCATGCGAC TCGAACCTAT GGGGGCAGCT ATGGGGGCCG TGGCCGTGGC CGGAGGACAG 1381 GCGGTCCTGC CTATGGCCCC AGCTCAGATG TGTCTACAGC TTCAGAGACT GAGTCAGAGA 1441 AGAGAGAGGA GCCCAACCGA GCTGGGCCTG GCGACAGGGA TCCCCCAACC CGAGGGGAAG 1501 AAAGCCGGAG GCGGCCGACT GGGGGCCGGG GTAGGGGACC CCCACCTGCC CCCCGGCCCA 1561 CTTCGAGATA CAATTCTTCA TCTATTAGCT CAGTGCTGAA GGATCCAGAC AGTAATCCCT 1621 ACAGCCTATT GGACACGTCT GAACCAGAGC CCCCGGTTGA TTCAGAACCT GGGGAACCCC 1681 CCCCAGCAAG TGCCAGGCGC CGCCGCTCCC GCCGCCGCCG CACTGATGAA GACAGGACCG 1741 TCATGGATGG AGGCCTGGAA TCAGATGGGC CCAACATGAC AGAGAATGGC CTGGAAGATG 1801 AATCAAGACC TCAACGTCGT AATCGCAGCC GCCGCCGCCG TAACCGTGGT AATCGGACTG 1861 ATGGCTCTAT CAGTGGAGAC CGCCAGCCAG TGACTGTGGC TGACTATATC TCACGAGCAG 1921 AGTCTCAGAG CCGCCAGAGG CCACCCCTGG AACGCACTAA ACCCTCAGAA GACTCTCTTT 1981 CAGGACAGAA GGGTGACTCT GTCAGCAAGC TTCCTAAGGG CCCCTCGGAG AATGGGGAGC 2041 TCTCCGCCCC CTTGGAGTTG GGTAGTATGG TGAATGGGGT TTCATACCCA ACTTTCTTGT 2101 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c