Construct: ORF ccsbBroadEn_07494
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011819.1_s300c1, BRDN0000396710
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARMCX2 (9823)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9823 | ARMCX2 | armadillo repeat containing... | NM_001282231.2 | 99.9% | 100% | 669G>C |
| 2 | human | 9823 | ARMCX2 | armadillo repeat containing... | NM_014782.7 | 99.9% | 100% | 669G>C |
| 3 | human | 9823 | ARMCX2 | armadillo repeat containing... | NM_177949.4 | 99.9% | 100% | 669G>C |
| 4 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_005278109.1 | 99.9% | 100% | 669G>C |
| 5 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_005278110.1 | 99.9% | 100% | 669G>C |
| 6 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_005278111.1 | 99.9% | 100% | 669G>C |
| 7 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_005278113.1 | 99.9% | 100% | 669G>C |
| 8 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_005278114.1 | 99.9% | 100% | 669G>C |
| 9 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_005278115.1 | 99.9% | 100% | 669G>C |
| 10 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_005278116.1 | 99.9% | 100% | 669G>C |
| 11 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_005278117.1 | 99.9% | 100% | 669G>C |
| 12 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_011531071.1 | 99.9% | 100% | 669G>C |
| 13 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_011531072.1 | 99.9% | 100% | 669G>C |
| 14 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029987.2 | 99.9% | 100% | 669G>C |
| 15 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029988.2 | 99.9% | 100% | 669G>C |
| 16 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029989.1 | 99.9% | 100% | 669G>C |
| 17 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029990.1 | 99.9% | 100% | 669G>C |
| 18 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029991.1 | 99.9% | 100% | 669G>C |
| 19 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029992.1 | 99.9% | 100% | 669G>C |
| 20 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029993.1 | 99.9% | 100% | 669G>C |
| 21 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029994.1 | 99.9% | 100% | 669G>C |
| 22 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029995.1 | 99.9% | 100% | 669G>C |
| 23 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029996.1 | 99.9% | 100% | 669G>C |
| 24 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_017029997.1 | 99.9% | 100% | 669G>C |
| 25 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_024452483.1 | 99.9% | 100% | 669G>C |
| 26 | human | 9823 | ARMCX2 | armadillo repeat containing... | XM_024452484.1 | 99.9% | 100% | 669G>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1962
- ORF length:
- 1896
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CCGCGTTCGG GATGCTGGCT GTGTAGCGGC GGGGATAGTG ATAGGGGCTG 121 GTGCCTGGTA CTGTGTCTAC AAATACACCA GGGGGAGAGA CCAGACCAAG AAGAGAATGG 181 CCAAGCCCAA AAACCGGGCT GTGGCTGGGA CTGGAGCCAG GGCTAGAGCT GGGCTAAGAG 241 CCGGATTCAC AATCGACCTT GGGTCAGGAT TCAGTCCCCC AACCCCAGTC CGTGCTGAAG 301 CAGAGGACAG GGCCCAGGAT GAAGCCTCTG CTCTGGACAC AGTTGGAGCT GAGGCAGTGG 361 CCCCAGCTGC ATCCAGCGCT GAGGCTCAGA GTGGGGCAGG CAGTCAGGCC CAAGAGGCAG 421 ATGGAGCCGG GGTTGGGCCT AAGGCCGAAT CAGTAGTTGG GGCTGCAATG GCTTCTGCAA 481 TAGCACCACC TCCCGGGGTG ACAGAGGCCC TTGGGGCTGC AGAAGCCCCT GCAATGGCAG 541 GGGCTCCCAA AGTGGCAGAA GCTCCCAGAG AAGCGGAGAC TTCCAGGGCA GCGGTGCCTC 601 CTGGGACAGT GGTGCCTACC GAAGCGGCAG CACCCACTGA GGTGACCGAG GGTCCTGGGG 661 TAGCAGCACC TACCAAGGTA GCTGAAGCTC CCGGGGTGGC ATCGCCTACC GAGGCAGCTG 721 AGGCTCCTGT GCCCGCAACG CCTACTGGGG CTGCAGCACC TACTGGGGCT GCAGAGTCTC 781 CTGGAACTTC TGGTTCCCCT AGAACAGCGG TGGTTCCTGG AACATCAGCT GCCAAGAAAG 841 CAACCCCTGG GGCTCACACT GGGGCTATAC CGAAAGCCAC ATCAGCGACT GGAGCGGTAC 901 CCAAAGGTGG AGGCAAGGGT GTAACCAGGT CCCGGAATGG GGGCAAGGGC AAGGGCAAGA 961 AAAGCAAAGT TGAAGTAGAC GAACTGGGGA TGGGCTTCCG TCCTGGAGAT GGGGCTGCAG 1021 CAGCTGCTGC AGCCTCTGCT AATGGCGGAC AGGCTTTCCT GGCAGAGGTC CCTGATTCTG 1081 AGGAAGGGGA GTCCGGGTGG ACTGACACAG AGTCAGATTC AGACTCTGAG CCCGAGACCC 1141 AGCGCAGAGG GAGGGGAAGA AGACCCGTTG CCATGCAGAA GCGCCCCTTT CCTTATGAAA 1201 TTGATGAGAT TCTGGGTGTC CGCGATCTCA GGAAGGTCCT TGCCTTGCTT CAGAAATCTG 1261 ATGATCCTTT CATCCAACAG GTAGCTTTGC TCACTCTGAG CAACAATGCC AATTATTCAT 1321 GCAATCAAGA GACAATCCGC AAATTGGGAG GCCTCCCAAT TATTGCAAAC ATGATCAACA 1381 AAACTGATCC ACACATTAAG GAAAAAGCCT TAATGGCCAT GAATAACCTG AGTGAGAATT 1441 ATGAAAATCA GGGCCGGCTT CAGGTGTACA TGAATAAAGT GATGGATGAT ATCATGGCCT 1501 CTAACCTGAA CTCAGCAGTT CAAGTAGTTG GACTAAAATT TCTAACAAAC ATGACTATTA 1561 CTAATGACTA CCAACACCTG CTTGTCAATT CCATTGCAAA CTTTTTCCGT TTGCTATCTC 1621 AGGGAGGTGG AAAAATCAAG GTTGAGATTT TGAAAATCCT TTCGAATTTT GCTGAAAATC 1681 CAGATATGTT GAAGAAACTT CTCAGTACCC AAGTGCCAGC ATCATTTAGT TCCCTCTATA 1741 ATTCTTACGT GGAATCAGAA ATCCTTATTA ATGCCCTTAC TCTATTTGAG ATTATCTATG 1801 ACAATCTCAG AGCAGAAGTG TTTAACTATA GAGAATTCAA TAAAGGTTCC CTTTTTTACT 1861 TATGCACTAC ATCTGGAGTG TGTGTTAAGA AAATTAGAGC CTTAGCAAAT CACCATGACC 1921 TCTTAGTGAA AGTGAAAGTT ATAAAACTAG TGAACAAATT CTGCCCAGCT TTCTTGTACA 1981 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac