Construct: ORF ccsbBroadEn_07595
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007801.1_s300c1, BRDN0000391601
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRG3 (10394)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10394 | PRG3 | proteoglycan 3, pro eosinop... | NM_006093.4 | 99.7% | 99.1% | 7T>C;326T>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 744
- ORF length:
- 675
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAACGCCTC TTGCTCCTGC CCTTTCTCCT GCTGGGAACA GTTTCTGCTC 121 TTCATCTGGA GAATGATGCC CCCCATCTGG AGAGCCTAGA GACACAGGCA GACCTAGGCC 181 AGGATCTGGA TAGTTCAAAG GAGCAGGAGA GAGACTTGGC TCTGACGGAG GAGGTGATTC 241 AGGCAGAGGG AGAGGAGGTC AAGGCTTCTG CCTGTCAAGA CAACTTTGAG GATGAGGAAG 301 CCATGGAGTC GGACCCAGCT GCCTTAGACA AGGACTTCCA GTGCCCCAGG GAAGAAGACA 361 TTGTTGAAGT GCAGGGAAGT CCAAGGTGCA AGACCTGCCG CTACCTATTG GTGCGGACTC 421 CTAAAACTTT TGCAGAAGCT CAGAATGTCT GCAGCAGATG CTACGGAGGC AACCTTGTCT 481 CTATCCATGA CTTCAACTTC AACTATCGCA TTCAGTGCTG CACTAGCACA GTCAACCAAG 541 CCCAGGTCTG GATTGGAGGC AACCTCAGGG GCTGGTTCCT GTGGAAGCGG TTTTGCTGGA 601 CTGATGGGAG CCACTGGAAT TTTGCTTACT GGTCCCCAGG GCAACCTGGG AATGGGCAAG 661 GCTCCTGTGT GGCCCTATGC ACCAAAGGAG GTTATTGGCG ACGAGCTCAA TGCGACAAGC 721 AACTGCCCTT CGTCTGCTCC TTCTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa 781 agcattgctt atcaatttgt tgcaacgaac