Construct: ORF ccsbBroadEn_07935
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004998.1_s300c1, BRDN0000385391
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IFIT5 (24138)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 24138 | IFIT5 | interferon induced protein ... | NM_012420.3 | 99.9% | 100% | 1044C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1512
- ORF length:
- 1446
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TGAAATTCGT AAGGACACCT TGAAGGCCAT TCTGTTGGAG TTAGAATGTC 121 ATTTTACATG GAATTTACTT AAGGAAGACA TTGATCTGTT TGAGGTAGAA GATACAATTG 181 GGCAACAGCT TGAATTTCTT ACCACAAAAT CTAGACTTGC TCTTTATAAC CTATTGGCCT 241 ATGTGAAACA CCTAAAAGGC CAAAATAAAG ACGCCCTTGA GTGCTTGGAA CAAGCAGAAG 301 AAATAATCCA GCAAGAACAC TCAGACAAAG AAGAAGTACG AAGCCTGGTC ACTTGGGGAA 361 ACTATGCCTG GGTGTATTAT CACATGGACC AGCTTGAAGA AGCTCAGAAG TATACAGGTA 421 AGATAGGGAA TGTCTGTAAG AAATTGTCCA GTCCTTCTAA CTACAAGTTG GAGTGTCCTG 481 AGACTGACTG TGAGAAAGGC TGGGCACTCT TGAAATTTGG AGGAAAGTAT TATCAAAAGG 541 CTAAAGCGGC TTTTGAGAAG GCTCTGGAAG TGGAGCCTGA CAATCCAGAA TTTAACATCG 601 GCTATGCTAT CACAGTGTAT CGGCTGGATG ATTCTGATAG AGAAGGGTCT GTAAAGAGCT 661 TTTCTCTGGG GCCTTTGAGA AAGGCTGTTA CCCTGAACCC AGATAACAGC TATATTAAGG 721 TTTTTCTGGC ACTGAAGCTT CAAGATGTAC ATGCAGAAGC TGAAGGGGAA AAGTATATTG 781 AAGAAATCCT GGACCAAATA TCATCCCAGC CTTACGTCCT TCGTTATGCA GCCAAGTTCT 841 ATAGGAGAAA AAATTCCTGG AACAAAGCTC TCGAACTTTT AAAAAAGGCC TTGGAGGTGA 901 CACCAACTTC TTCTTTCCTG CATCACCAGA TGGGACTTTG CTACAGGGCA CAAATGATCC 961 AAATCAAGAA GGCCACACAC AACAGACCTA AAGGAAAGGA TAAACTAAAG GTTGATGAGC 1021 TGATTTCATC TGCTATATTT CATTTCAAAG CAGCCATGGA ACGAGACTCT ATGTTTGCAT 1081 TTGCCTACAC AGACCTGGCC AACATGTATG CTGAAGGAGG CCAGTATAGC AATGCTGAGG 1141 ACATTTTCCG GAAAGCTCTT CGTCTGGAGA ACATAACCGA TGATCACAAA CATCAGATCC 1201 ATTACCACTA TGGCCGCTTT CAGGAATTTC ACCGTAAATC AGAAAATACT GCCATCCATC 1261 ATTATTTAGA AGCCTTAAAG GTCAAAGACA GATCACCCCT TCGCACCAAA CTGACAAGTG 1321 CTCTGAAGAA ATTGTCTACC AAGAGACTTT GTCACAATGC TTTAGATGTG CAGAGTTTAA 1381 GTGCCCTAGG GTTTGTTTAC AAGCTGGAAG GAGAAAAGAG GCAAGCTGCT GAGTACTATG 1441 AGAAGGCACA AAAGATAGAT CCAGAAAATG CAGAATTCCT GACTGCTCTC TGTGAGCTCC 1501 GACTTTCCAT TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1561 caatttgttg caacgaac