Construct: ORF ccsbBroadEn_08024
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013160.1_s300c1, BRDN0000391492
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR11A1 (26531)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26531 | OR11A1 | olfactory receptor family 1... | NM_013937.3 | 99.7% | 99.3% | 220C>T;493G>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1014
- ORF length:
- 945
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAAATTGTC TCCACAGGAA ACGAAACTAT TACTGAATTT GTCCTCCTTG 121 GCTTCTATGA CATCCCTGAA CTGCATTTCT TGTTTTTTAT TGTATTCACT GCTGTCTATG 181 TCTTCATCAT CATAGGGAAT ATGCTGATTA TTGTAGCAGT GGTTAGCTCC CAGAGGCTCC 241 ACAAACCCAT GTATATTTTC TTGGCGAATC TGTCCTTCCT GGATATTTTC TACACCTCCG 301 CAGTGATGCC AAAAATGCTG GAGGGCTTCC TGCAAGAAGC AACTATCTCT GTGGCTGGTT 361 GCTTGCTCCA GTTCTTTATC TTCGGCTCTC TAGCCACAGC TGAATGCTTA CTGCTGGCTG 421 TCATGGCATA TGACCGCTAC CTGGCAATTT GCTACCCACT CCACTACCCA CTCCTGATGG 481 GGCCCAGACG GTACATGGGG CTGGTGGTCA CAACCTGGCT CTCTGGATTT GTGGTAGATG 541 GACTGGTTGT GGCCCTGGTG ACCCAGCTGA GGTTCTGTGG CCCCAACCAC ATTGACCAGT 601 TTTACTGTGA CTTTATGCTT TTCGTGGGCC TGGCTTGCTC GGATCCCAGA GTGGCTCAGG 661 TGACAACTCT CATTCTGTCT GTGTTCTGCC TCACTATTCC TTTTGGACTG ATTCTGACAT 721 CTTATGCCAG AATTGTGGTG GCAGTGCTGA GAGTTCCTGC TGGGGCAAGC AGGAGAAGGG 781 CTTTCTCCAC ATGCTCCTCC CACCTAGCTG TAGTGACCAC ATTCTATGGA ACGCTCATGA 841 TCTTTTATGT TGCACCCTCT GCTGTCCATT CCCAGCTCCT CTCCAAGGTC TTCTCCCTGC 901 TCTACACTGT GGTCACCCCT CTCTTCAATC CTGTGATCTA TACCATGAGG AACAAGGAGG 961 TGCATCAGGC ACTTCGGAAG ATTCTCTGTA TCAAACAAAC TGAAACACTT GATTTGCCAA 1021 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac