Construct: ORF ccsbBroadEn_08175
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007928.1_s300c1, BRDN0000391039
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- G0S2 (50486)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 50486 | G0S2 | G0/G1 switch 2 | NM_015714.4 | 99.6% | 100% | 297G>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 375
- ORF length:
- 309
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AACGGTCCAG GAGCTGATCC CCCTGGCCAA GGAGATGATG GCCCAGAAGC 121 GCAAGGGGAA GATGGTGAAG CTGTACGTGC TGGGCAGCGT GCTGGCCCTC TTCGGCGTGG 181 TGCTCGGCCT GATGGAGACT GTGTGCAGCC CCTTCACGGC CGCCAGACGT CTGCGGGACC 241 AGGAGGCAGC CGTGGCGGAG CTGCAGGCCG CCCTGGAGCG ACAGGCTCTC CAGAAGCAAG 301 CCCTGCAGGA GAAAGGCAAG CAGCAGGACA CGGTCCTCGG CGGCCGGGCC CTGTCCAACC 361 GACAGCACGC CTCCTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 421 tatcaatttg ttgcaacgaa c