Construct: ORF ccsbBroadEn_08212
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002803.1_s300c1, BRDN0000393459
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MRPS7 (51081)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51081 | MRPS7 | mitochondrial ribosomal pro... | NM_015971.4 | 99.8% | 99.5% | 5C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 792
- ORF length:
- 726
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT TGCCCCCGCA GTGAAGGTTG CCCGAGGATG GTCGGGCCTG GCGTTGGGCG 121 TGCGGCGGGC TGTCTTGCAG CTTCCAGGGC TAACTCAGGT GAGATGGAGC CGCTATAGTC 181 CTGAATTCAA GGATCCCTTG ATTGACAAGG AATATTATCG CAAGCCAGTG GAGGAGCTAA 241 CTGAGGAGGA GAAATATGTT CGGGAGCTCA AGAAGACTCA GCTCATCAAA GCTGCTCCAG 301 CAGGGAAAAC AAGTTCTGTG TTTGAAGACC CAGTCATCAG TAAATTCACC AACATGATGA 361 TGATAGGAGG AAACAAAGTA CTGGCCAGAT CCCTCATGAT TCAGACTCTG GAAGCTGTGA 421 AAAGGAAGCA GTTTGAGAAG TACCATGCCG CTTCTGCAGA GGAACAGGCA ACCATCGAAC 481 GCAACCCCTA CACCATCTTC CATCAAGCAC TGAAAAACTG TGAGCCTATG ATTGGGCTGG 541 TACCCATCCT CAAGGGAGGC CGTTTCTACC AGGTCCCTGT ACCCCTACCC GACCGGCGTC 601 GCCGCTTCCT AGCCATGAAG TGGATGATCA CTGAGTGCCG GGATAAAAAG CACCAGCGGA 661 CACTGATGCC GGAGAAGCTG TCACACAAGC TGCTGGAGGC TTTCCATAAC CAGGGCCCCG 721 TGATCAAGAG GAAGCATGAC TTGCACAAGA TGGCAGAGGC CAACCGTGCC CTGGCCCACT 781 ACCGCTGGTG GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 841 caatttgttg caacgaac