Construct: ORF ccsbBroadEn_08214
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011067.1_s300c1, BRDN0000385013
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GAL (51083)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51083 | GAL | galanin and GMAP prepropeptide | NM_015973.5 | 99.7% | 100% | 24G>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 435
- ORF length:
- 369
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CCGAGGCAGC GCCCTCCTTC TCGCCTCCCT CCTCCTCGCC GCGGCCCTTT 121 CTGCCTCTGC GGGGCTCTGG TCGCCGGCCA AGGAAAAACG AGGCTGGACC CTGAACAGCG 181 CGGGCTACCT GCTGGGCCCA CATGCCGTTG GCAACCACAG GTCATTCAGC GACAAGAATG 241 GCCTCACCAG CAAGCGGGAG CTGCGGCCCG AAGATGACAT GAAACCAGGA AGCTTTGACA 301 GGTCCATACC TGAAAACAAT ATCATGCGCA CAATCATTGA GTTTCTGTCT TTCTTGCATC 361 TCAAAGAGGC CGGTGCCCTC GACCGCCTCC TGGATCTCCC CGCCGCAGCC TCCTCAGAAG 421 ACATCGAGCG GTCCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 481 tatcaatttg ttgcaacgaa c