Construct: ORF ccsbBroadEn_08227
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011202.1_s300c1, BRDN0000397548
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANGPTL4 (51129)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51129 | ANGPTL4 | angiopoietin like 4 | NM_139314.3 | 99.9% | 100% | 1167G>A |
| 2 | human | 51129 | ANGPTL4 | angiopoietin like 4 | XM_005272484.3 | 95.6% | 95.7% | 1039_1092del;1221G>A |
| 3 | human | 51129 | ANGPTL4 | angiopoietin like 4 | NM_001039667.3 | 90.5% | 90.3% | 547_548ins114;1053G>A |
| 4 | human | 51129 | ANGPTL4 | angiopoietin like 4 | XM_005272485.3 | 86.7% | 86.5% | 547_548ins114;925_978del;1107G>A |
| 5 | human | 51129 | ANGPTL4 | angiopoietin like 4 | NR_104213.2 | 40.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1284
- ORF length:
- 1218
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CGGTGCTCCG ACGGCCGGGG CAGCCCTGAT GCTCTGCGCC GCCACCGCCG 121 TGCTACTGAG CGCTCAGGGC GGACCCGTGC AGTCCAAGTC GCCGCGCTTT GCGTCCTGGG 181 ACGAGATGAA TGTCCTGGCG CACGGACTCC TGCAGCTCGG CCAGGGGCTG CGCGAACACG 241 CGGAGCGCAC CCGCAGTCAG CTGAGCGCGC TGGAGCGGCG CCTGAGCGCG TGCGGGTCCG 301 CCTGTCAGGG AACCGAGGGG TCCACCGACC TCCCGTTAGC CCCTGAGAGC CGGGTGGACC 361 CTGAGGTCCT TCACAGCCTG CAGACACAAC TCAAGGCTCA GAACAGCAGG ATCCAGCAAC 421 TCTTCCACAA GGTGGCCCAG CAGCAGCGGC ACCTGGAGAA GCAGCACCTG CGAATTCAGC 481 ATCTGCAAAG CCAGTTTGGC CTCCTGGACC ACAAGCACCT AGACCATGAG GTGGCCAAGC 541 CTGCCCGAAG AAAGAGGCTG CCCGAGATGG CCCAGCCAGT TGACCCGGCT CACAATGTCA 601 GCCGCCTGCA CCGGCTGCCC AGGGATTGCC AGGAGCTGTT CCAGGTTGGG GAGAGGCAGA 661 GTGGACTATT TGAAATCCAG CCTCAGGGGT CTCCGCCATT TTTGGTGAAC TGCAAGATGA 721 CCTCAGATGG AGGCTGGACA GTAATTCAGA GGCGCCACGA TGGCTCAGTG GACTTCAACC 781 GGCCCTGGGA AGCCTACAAG GCGGGGTTTG GGGATCCCCA CGGCGAGTTC TGGCTGGGTC 841 TGGAGAAGGT GCATAGCATC ACGGGGGACC GCAACAGCCG CCTGGCCGTG CAGCTGCGGG 901 ACTGGGATGG CAACGCCGAG TTGCTGCAGT TCTCCGTGCA CCTGGGTGGC GAGGACACGG 961 CCTATAGCCT GCAGCTCACT GCACCCGTGG CCGGCCAGCT GGGCGCCACC ACCGTCCCAC 1021 CCAGCGGCCT CTCCGTACCC TTCTCCACTT GGGACCAGGA TCACGACCTC CGCAGGGACA 1081 AGAACTGCGC CAAGAGCCTC TCTGGAGGCT GGTGGTTTGG CACCTGCAGC CATTCCAACC 1141 TCAACGGCCA GTACTTCCGC TCCATCCCAC AGCAGCGGCA GAAGCTTAAG AAGGGAATCT 1201 TCTGGAAGAC CTGGCGGGGC CGCTACTACC CACTGCAGGC CACCACCATG TTGATCCAGC 1261 CCATGGCAGC AGAGGCAGCC TCCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1321 agcattgctt atcaatttgt tgcaacgaac