Construct: ORF ccsbBroadEn_08246

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001089.1_s300c1, BRDN0000457405
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HERC5 (51191)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51191 HERC5 HECT and RLD domain contain... NM_016323.4 99.9% 99.9% 303C>A;1492A>G;2358T>C
2 human 51191 HERC5 HECT and RLD domain contain... XM_011532022.2 80.6% 80.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3141
ORF length:
3072
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGCGGAGG TCGCGGAGGA AGTCGCGGCG CAACGGGCGC TCGACCGCGG
121GCAAGGCCGC CGCGACCCAG CCCGCGAAGT CTCCGGGCGC ACAGCTCTGG CTCTTTCCCA
181GCGCCGCGGG CCTCCACCGC GCGCTGCTCC GGAGGGTGGA GGTGACGCGC CAACTCTGCT
241GCTCGCCGGG GCGCCTCGCG GTCTTGGAAC GCGGCGGGGC GGGCGTCCAG GTTCACCAGC
301TGCTCGCCGG GAGCGGCGGC GCCCGGACGC CGAAATGCAT TAAATTAGGA AAAAACATGA
361AGATACATTC AGTGGACCAA GGAGCAGAGC ACATGCTGAT TCTCTCATCA GATGGAAAAC
421CATTTGAGTA TGACAACTAT AGCATGAAAC ATCTAAGGTT TGAAAGCATT TTACAAGAAA
481AAAAAATAAT TCAGATCACA TGTGGAGATT ACCATTCTCT TGCACTCTCA AAAGGTGGTG
541AGCTTTTTGC CTGGGGACAG AACCTGCATG GGCAGCTTGG AGTTGGAAGG AAATTTCCCT
601CAACCACCAC ACCACAGATT GTGGAGCACC TCGCAGGAGT ACCCTTGGCT CAGATTTCTG
661CCGGAGAAGC CCACAGCATG GCCTTATCCA TGTCTGGCAA CATTTATTCA TGGGGAAAAA
721ATGAATGTGG ACAACTAGGC CTGGGCCACA CTGAGAGTAA AGATGATCCA TCCCTTATTG
781AAGGACTAGA CAATCAGAAA GTTGAATTTG TCGCTTGTGG TGGCTCTCAC AGTGCCCTAC
841TCACACAGGA TGGGCTGCTG TTTACTTTCG GTGCTGGAAA ACATGGGCAA CTTGGTCATA
901ATTCAACACA GAATGAGCTA AGACCCTGTT TGGTGGCTGA GCTTGTTGGG TATAGAGTGA
961CTCAGATAGC ATGTGGAAGG TGGCACACAC TTGCCTATGT TTCTGATTTG GGAAAGGTCT
1021TTTCCTTTGG TTCTGGAAAA GATGGACAAC TGGGAAATGG TGGAACACGT GACCAGCTGA
1081TGCCGCTTCC AGTGAAAGTA TCATCAAGTG AAGAACTCAA ACTTGAAAGC CATACCTCAG
1141AAAAGGAGTT AATAATGATT GCTGGAGGGA ATCAAAGCAT TTTGCTCTGG ATAAAGAAAG
1201AGAATTCATA TGTTAATCTG AAGAGGACAA TTCCTACTCT GAATGAAGGG ACTGTAAAGA
1261GATGGATTGC TGATGTGGAG ACTAAACGGT GGCAGAGCAC AAAAAGGGAA ATCCAAGAGA
1321TATTTTCATC TCCTGCTTGT CTAACTGGAA GTTTTTTAAG GAAAAGAAGA ACTACAGAAA
1381TGATGCCTGT TTATTTGGAC TTAAATAAAG CAAGAAACAT CTTCAAGGAG TTAACCCAAA
1441AGGACTGGAT TACTAACATG ATAACCACCT GCCTCAAAGA TAATCTGCTC AAAAGACTTC
1501CATTTCATTC TCCACCCCAA GAAGCTTTAG AAATTTTCTT CCTTCTCCCA GAATGTCCTG
1561TGATGCATAT TTCCAACAAC TGGGAGAGCC TTGTGGTTCC ATTTGCAAAG GTTGTTTGTA
1621AAATGAGTGA CCAGTCTTCA CTGGTTCTGG AAGAGTATTG GGCAACTCTG CAAGAATCCA
1681CTTTCAGCAA ACTGGTCCAG ATGTTTAAAA CAGCCGTCAT ATGCCAGTTG GATTACTGGG
1741ATGAAAGTGC TGAGGAGAAT GGTAATGTTC AAGCTCTCCT AGAAATGTTG AAGAAGCTGC
1801ACAGGGTAAA CCAGGTGAAA TGTCAACTAC CTGAAAGTAT TTTCCAAGTA GACGAACTCT
1861TGCACCGTCT CAATTTTTTT GTAGAAGTAT GCAGAAGGTA CTTGTGGAAA ATGACTGTGG
1921ACGCTTCAGA AAATGTACAA TGCTGCGTCA TATTCAGTCA CTTTCCATTT ATCTTTAATA
1981ATCTGTCGAA AATTAAACTA CTACATACAG ACACACTTTT AAAAATAGAG AGTAAAAAAC
2041ATAAAGCTTA TCTTAGGTCG GCAGCAATTG AGGAAGAAAG AGAGTCTGAA TTCGCTTTGA
2101GGCCCACGTT TGATCTAACA GTCAGAAGGA ATCACTTGAT TGAGGATGTT TTGAATCAGC
2161TAAGTCAATT TGAGAATGAA GACCTGAGGA AAGAGTTATG GGTTTCATTT AGTGGAGAAA
2221TTGGGTATGA CCTCGGAGGA GTCAAGAAAG AGTTCTTCTA CTGTCTGTTT GCAGAGATGA
2281TCCAGCCGGA ATATGGGATG TTCATGTATC CTGAAGGGGC TTCCTGCATG TGGTTTCCTG
2341TCAAGCCTAA ATTTGAGAAG AAAAGATACT TCTTTTTTGG GGTTCTATGT GGACTTTCCC
2401TGTTCAATTG CAATGTTGCC AACCTCCCTT TCCCACTGGC ACTGTTTAAG AAACTTTTGG
2461ACCAAATGCC ATCATTGGAA GACTTGAAAG AACTCAGTCC TGATTTGGGA AAGAATTTGC
2521AAACACTTCT GGATGATGAA GGTGATAACT TTGAGGAAGT ATTTTACATC CATTTTAATG
2581TGCACTGGGA CAGAAACGAC ACAAACTTAA TTCCTAATGG AAGTAGCATA ACTGTCAACC
2641AGACTAACAA GAGAGACTAT GTTTCTAAGT ATATCAATTA CATTTTCAAC GACTCTGTAA
2701AGGCGGTTTA TGAAGAATTT CGGAGAGGAT TTTATAAAAT GTGCGACGAA GACATTATCA
2761AATTATTCCA CCCCGAAGAA CTGAAGGATG TGATTGTTGG AAATACAGAT TATGATTGGA
2821AAACATTTGA AAAGAATGCA CGTTATGAAC CAGGATATAA CAGTTCACAT CCCACCATAG
2881TGATGTTTTG GAAGGCTTTC CACAAATTGA CTCTGGAAGA AAAGAAAAAA TTCCTTGTAT
2941TTCTTACAGG AACTGACAGA CTACAAATGA AAGATTTAAA TAATATGAAA ATAACATTTT
3001GCTGTCCTGA AAGTTGGAAT GAAAGAGACC CTATAAGAGC ACTGACATGT TTCAGTGTCC
3061TCTTCCTCCC TAAATATTCT ACAATGGAAA CAGTTGAAGA AGCGCTTCAA GAAGCCATCA
3121ACAACAACAG AGGATTTGGC TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc
3181attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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