Construct: ORF ccsbBroadEn_08443
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005207.1_s300c1, BRDN0000394178
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF770 (54989)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54989 | ZNF770 | zinc finger protein 770 | NM_014106.4 | 99.9% | 100% | 1080A>T |
| 2 | human | 54989 | ZNF770 | zinc finger protein 770 | XM_011521744.3 | 99.9% | 100% | 1080A>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2139
- ORF length:
- 2073
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GGCTGAAAAC AATTTAAAAA TGCTAAAGAT TCAACAGTGT GTGGTAGCCA 121 ACAAACTACC TAGAAACAGG CCATATGTTT GCAATATTTG TTTTAAGCAC TTTGAAACAC 181 CATCAAAATT AGCTAGGCAC TATCTCATTC ATACTGGTCA AAAGCCATTT GAATGTGATG 241 TGTGTCATAA AACCTTTAGA CAACTAGTTC ATCTGGAGAG GCATCAACTA ACTCATAGTC 301 TGCCTTTTAA ATGTAGTATT TGTCAGCGTC ACTTTAAAAA TCTGAAGACA TTTGTGAAGC 361 ACCAACAACT TCACAATGAA ACCTATCAGA ATAATGTTAA ACAGGTCAGA AGATTGCTGG 421 AGGCCAAGCA AGAAAAGTCA ATGTATGGAG TGTATAATAC TTTTACCACA GAGGAAAGAT 481 GGGCATTACA CCCGTGCTCT AAGTCTGATC CCATGTATAG CATGAAAAGA AGAAAGAATA 541 TTCATGCATG TACAATCTGT GGCAAGATGT TTCCATCACA GTCAAAACTT GATAGGCATG 601 TACTTATTCA TACTGGTCAG AGGCCTTTTA AATGTGTCTT GTGTACTAAA TCTTTTCGAC 661 AGTCAACTCA CTTAAAAATC CACCAACTTA CACATTCAGA AGAAAGACCT TTTCAATGTT 721 GTTTTTGTCA AAAAGGATTT AAGATTCAAA GCAAACTTCT GAAGCATAAA CAAATCCATA 781 CTAGGAATAA GGCTTTTCGG GCTCTTTTAT TAAAGAAGAG GCGTACAGAA TCTCGCCCCC 841 TGCCTAATAA GTTAAATGCA AATCAGGGTG GTTTTGAAAA TGGTGAGATT GGTGAATCTG 901 AGGAGAATAA TCCACTTGAT GTCCACTCAA TTTATATTGT CCCTTTTCAA TGTCCAAAGT 961 GTGAAAAGTG TTTTGAATCA GAGCAGATTC TCAATGAACA CAGCTGTTTT GCTGCTAGAA 1021 GTGGCAAAAT TCCAAGCAGG TTCAAAAGAA GCTACAACTA TAAAACCATT GTTAAAAAAA 1081 TCTTGGCCAA GCTTAAGCGT GCTAGGAGTA AAAAATTAGA TAACTTTCAA TCTGAGAAAA 1141 AAGTTTTTAA AAAGAGTTTC TTGAGAAATT GTGATCTTAT TTCTGGTGAG CAGAGCTCTG 1201 AACAAACCCA GAGAACATTT GTGGGTTCTC TTGGCAAACA TGGAACATAT AAAACAATTG 1261 GCAATAGAAA GAAGAAAACA TTGACTTTGC CATTTTCTTG GCAAAATATG GGAAAAAATT 1321 TGAAAGGCAT CCTTACGACA GAAAACATAT TAAGCATTGA TAATTCAGTG AATAAGAAAG 1381 ACTTGTCAAT CTGTGGTTCA TCAGGTGAGG AATTCTTTAA TAACTGTGAG GTACTTCAGT 1441 GTGGTTTTTC AGTTCCAAGG GAAAACATAC GTACTAGACA TAAGATATGT CCTTGTGACA 1501 AATGTGAGAA GGTATTTCCT TCTATATCCA AACTAAAAAG ACACTATTTA ATTCATACTG 1561 GACAGAGGCC CTTTGGCTGT AATATTTGTG GGAAATCTTT TAGACAGTCA GCTCACTTAA 1621 AAAGACATGA ACAGACTCAT AATGAAAAGA GTCCTTATGC ATCTCTTTGC CAAGTAGAAT 1681 TTGGAAACTT CAACAATCTT TCTAATCATT CAGGTAATAA TGTTAACTAT AATGCTTCCC 1741 AACAATGTCA GGCTCCTGGT GTTCAAAAAT ACGAGGTCTC AGAGTCAGAT CAAATGTCAG 1801 GAGTTAAGGC AGAGTCACAG GATTTTATTC CTGGTAGCAC CGGGCAACCC TGTCTTCCTA 1861 ATGTACTTTT GGAATCAGAG CAAAGCAATC CTTTTTGCAG TTATTCAGAG CATCAGGAGA 1921 AAAATGATGT CTTCCTGTAC CGATGCAGTG TTTGTGCTAA AAGTTTCCGA TCTCCATCTA 1981 AACTGGAAAG ACACTACCTA ATTCATGCAG GGCAGAAACC ATTTGAATGC TCAGTTTGTG 2041 GCAAAACATT CAGACAGGCT CCTCACTGGA AGAGACATCA GCTTACTCAC TTTAAAGAAC 2101 GACCACAAGG GAAAGTGGTT GCCTTAGATT CGGTTATGTA CCCAACTTTC TTGTACAAAG 2161 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac