Construct: ORF ccsbBroadEn_08546
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003739.1_s300c1, BRDN0000396556
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FOXRED1 (55572)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | NM_017547.4 | 99.9% | 99.7% | 1027G>C |
| 2 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_017018000.2 | 99.7% | 99.5% | 1027G>C;1099_1100insAGC |
| 3 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | NR_037648.2 | 70.2% | (many diffs) | |
| 4 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_006718879.3 | 64.9% | 64.8% | 0_1ins510;517G>C |
| 5 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_011542895.2 | 64.9% | 64.8% | 0_1ins510;517G>C |
| 6 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_011542896.2 | 64.9% | 64.8% | 0_1ins510;517G>C |
| 7 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_017018001.1 | 64.9% | 64.8% | 0_1ins510;517G>C |
| 8 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_017018002.1 | 64.9% | 64.8% | 0_1ins510;517G>C |
| 9 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | NR_037647.2 | 63.3% | (many diffs) | |
| 10 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_006718881.3 | 56.5% | 56.3% | 0_1ins633;394G>C |
| 11 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_017018003.2 | 56.5% | 56.3% | 0_1ins633;394G>C |
| 12 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_017018004.1 | 56.5% | 56.3% | 0_1ins633;394G>C |
| 13 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_017018005.1 | 56.5% | 56.3% | 0_1ins633;394G>C |
| 14 | human | 55572 | FOXRED1 | FAD dependent oxidoreductas... | XM_017018006.2 | 56.3% | 56.1% | 0_1ins633;394G>C;466_467insAGC |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1524
- ORF length:
- 1458
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT TCGGAGGGTT CTGCCGCACG GCATGGGCCG GGGCCTCTTG ACCCGGAGGC 121 CAGGCACGCG CAGAGGAGGC TTTTCTCTGG ACTGGGATGG AAAGGTGTCT GAGATTAAGA 181 AGAAGATCAA GTCGATCCTG CCTGGAAGGT CCTGTGATCT ACTGCAAGAC ACCAGCCACC 241 TGCCTCCCGA GCACTCGGAT GTGGTGATCG TGGGAGGTGG GGTGCTTGGC TTGTCTGTGG 301 CCTATTGGCT GAAGAAGCTG GAGAGCAGAC GAGGTGCTAT TCGAGTGCTA GTGGTGGAAC 361 GGGACCACAC GTATTCACAG GCCTCCACTG GGCTCTCAGT AGGTGGGATT TGTCAGCAGT 421 TCTCATTGCC TGAGAACATC CAGCTCTCCC TCTTTTCAGC CAGCTTTCTA CGGAACATCA 481 ATGAGTACCT GGCCGTAGTC GATGCTCCTC CCCTGGACCT CCGGTTCAAC CCCTCGGGCT 541 ACCTCTTGCT GGCTTCAGAA AAGGATGCTG CAGCCATGGA GAGCAACGTG AAAGTGCAGA 601 GGCAGGAGGG AGCCAAAGTT TCTCTGATGT CTCCTGATCA GCTTCGGAAC AAGTTTCCCT 661 GGATAAACAC AGAGGGAGTG GCTTTGGCGT CTTATGGGAT GGAGGACGAA GGTTGGTTTG 721 ACCCCTGGTG TCTGCTCCAG GGGCTTCGGC GAAAGGTCCA GTCCTTGGGA GTCCTTTTCT 781 GCCAGGGAGA GGTGACACGT TTTGTCTCTT CATCTCAACG CATGTTGACC ACAGATGACA 841 AAGCGGTGGT CTTGAAAAGG ATCCATGAAG TCCATGTGAA GATGGACCGC AGCCTGGAGT 901 ACCAGCCTGT GGAATGCGCC ATTGTGATCA ACGCAGCCGG AGCCTGGTCT GCGCAAATCG 961 CAGCACTGGC TGGTGTTGGA GAGGGGCCGC CTGGCACCCT GCAGGGCACC AAGCTACCTG 1021 TGGAGCCGAG GAAAAGGTAT GTGTATGTGT GGCACTGCCC CCAGGGACCA GGCCTAGAGA 1081 CTCCGCTTGT TCCAGACACC AGTGGAGCCT ATTTTCGCCG GGAAGGATTA GGTAGCAACT 1141 ACCTAGGTGG TCGTAGCCCC ACTGAGCAGG AAGAACCGGA CCCGGCGAAC CTGGAAGTGG 1201 ACCATGATTT CTTCCAGGAC AAGGTGTGGC CCCATTTGGC CCTGAGGGTC CCAGCTTTTG 1261 AGACTCTGAA GGTTCAGAGC GCCTGGGCCG GCTATTACGA CTACAACACC TTTGACCAGA 1321 ATGGCGTGGT GGGCCCCCAC CCGCTAGTTG TCAACATGTA CTTTGCTACT GGCTTCAGTG 1381 GTCACGGGCT CCAGCAGGCC CCTGGCATTG GGCGAGCTGT AGCAGAGATG GTACTGAAGG 1441 GCAGGTTCCA GACCATCGAC CTGAGCCCCT TCCTCTTTAC CCGCTTTTAC TTGGGAGAGA 1501 AGATCCAGGA GAACAACATC ATCTGTCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1561 agcattgctt atcaatttgt tgcaacgaac