Construct: ORF ccsbBroadEn_08606
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004055.1_s300c1, BRDN0000394775
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GABRQ (55879)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55879 | GABRQ | gamma-aminobutyric acid typ... | NM_018558.4 | 100% | 100% | |
| 2 | human | 55879 | GABRQ | gamma-aminobutyric acid typ... | XM_011531184.3 | 63.1% | 62% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1965
- ORF length:
- 1896
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGCATCCGA GGCATGCTGC GAGCCGCAGT GATCCTGCTG CTCATCAGGA 121 CCTGGCTCGC GGAGGGCAAC TACCCCAGTC CCATCCCGAA ATTCCACTTC GAGTTCTCCT 181 CTGCTGTGCC CGAAGTCGTC CTGAACCTCT TCAACTGCAA AAATTGTGCA AATGAAGCTG 241 TGGTTCAAAA GATTTTGGAC AGGGTGCTGT CAAGATACGA TGTCCGCCTG AGACCGAATT 301 TTGGAGGTGC CCCTGTGCCT GTGAGAATAT CTATTTATGT CACGAGCATT GAACAGATCT 361 CAGAAATGAA TATGGACTAC ACGATCACGA TGTTTTTTCA TCAGACTTGG AAAGATTCAC 421 GCTTAGCATA CTATGAGACC ACCCTGAACT TGACCCTGGA CTATCGGATG CATGAGAAGT 481 TGTGGGTCCC TGACTGCTAC TTTCTGAACA GCAAGGATGC TTTCGTGCAT GATGTGACTG 541 TGGAGAATCG CGTGTTTCAG CTTCACCCAG ATGGAACGGT GCGGTACGGC ATCCGACTCA 601 CCACTACAGC AGCTTGTTCC CTGGATCTGC ATAAATTCCC TATGGACAAG CAGGCCTGCA 661 ACCTGGTGGT AGAGAGCTAT GGTTACACGG TTGAAGACAT CATATTATTC TGGGATGACA 721 ATGGGAACGC CATCCACATG ACTGAGGAGC TGCATATCCC TCAGTTCACT TTCCTGGGAA 781 GGACGATTAC TAGCAAGGAG GTGTATTTCT ACACAGGTTC CTACATACGC CTGATACTGA 841 AGTTCCAGGT TCAGAGGGAA GTTAACAGCT ACCTTGTGCA AGTCTACTGG CCTACTGTCC 901 TCACCACTAT TACCTCTTGG ATATCGTTTT GGATGAACTA TGATTCCTCT GCAGCCAGGG 961 TGACAATTGG CTTAACTTCA ATGCTCATCC TGACCACCAT CGACTCACAT CTGCGGGATA 1021 AGCTCCCCAA CATTTCCTGT ATCAAGGCCA TTGATATCTA TATCCTCGTG TGCTTGTTCT 1081 TTGTGTTCCT GTCCTTGCTG GAGTATGTCT ACATCAACTA TCTTTTCTAC AGTCGAGGAC 1141 CTCGGCGCCA GCCTAGGCGA CACAGGAGAC CCCGAAGAGT CATTGCCCGC TACCGCTACC 1201 AGCAAGTGGT GGTAGGAAAC GTGCAGGATG GCCTGATTAA CGTGGAAGAC GGAGTCAGCT 1261 CTCTCCCCAT CACCCCAGCG CAGGCCCCCC TGGCAAGCCC GGAAAGCCTC GGTTCTTTGA 1321 CGTCCACCTC CGAGCAGGCC CAGCTGGCCA CCTCGGAAAG CCTCAGCCCA CTCACTTCTC 1381 TCTCAGGCCA GGCCCCCCTG GCCACTGGAG AAAGCCTGAG CGATCTCCCC TCCACCTCAG 1441 AGCAGGCCCG GCACAGCTAT GGTGTTCGCT TTAATGGTTT CCAGGCTGAT GACAGTATTA 1501 TTCCTACCGA AATCCGCAAC CGTGTCGAAG CCCATGGCCA TGGTGTTACC CATGACCATG 1561 AAGATTCCAA TGAGAGCTTG AGCTCGGATG AGCGCCATGG CCATGGCCCC AGTGGGAAGC 1621 CCATGCTTCA CCATGGCGAG AAGGGTGTGC AAGAAGCAGG CTGGGACCTT GATGACAACA 1681 ATGACAAGAG CGACTGCCTT GCCATTAAGG AGCAATTCAA GTGTGATACT AACAGTACCT 1741 GGGGCCTTAA TGATGATGAG CTCATGGCCC ATGGCCAAGA GAAGGACAGT AGCTCAGAGT 1801 CTGAGGATAG TTGCCCCCCA AGCCCTGGGT GCTCCTTCAC TGAAGGGTTC TCCTTCGATC 1861 TCTTTAATCC TGACTACGTC CCAAAGGTCG ACAAGTGGTC CCGGTTCCTC TTCCCTCTGG 1921 CCTTTGGGTT GTTCAACATT GTTTACTGGG TATACCATAT GTATTTGCCA ACTTTCTTGT 1981 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c