Construct: ORF ccsbBroadEn_08863

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008541.1_s300c1, BRDN0000389287
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C16orf58 (64755)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64755 C16orf58 chromosome 16 open reading ... NM_022744.4 99.9% 99.7% 554A>G
2 human 64755 C16orf58 chromosome 16 open reading ... XM_017023570.1 52.3% 52.3% 0_1ins669
3 human 64755 C16orf58 chromosome 16 open reading ... XR_950831.3 48.3% (many diffs)
4 mouse 233913 BC017158 cDNA sequence BC017158 XM_011241783.1 59.8% 58.1% (many diffs)
5 mouse 233913 BC017158 cDNA sequence BC017158 XM_011241784.2 53.3% 51.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1470
ORF length:
1404
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGACGACGCG GGTTTGGAGA CCCCGCTGTG TTCCGAGCAG TTCGGCTCCG
121GGGAGGCACG GGGCTGCCGC GCCGCCGCGG ACGGGAGCCT GCAGTGGGAG GTCGGGGGCT
181GGCGCTGGTG GGGGCTCTCC AGGGCCTTCA CGGTCAAACC TGAAGGACGA GATGCGGGCG
241AAGTGGGGGC TTCCGGGGCC CCCTCACCGC CCCTCTCCGG GCTCCAGGCC GTGTTCCTGC
301CTCAGGGCTT CCCTGATAGC GTCAGCCCGG ACTACTTGCC CTACCAGCTG TGGGATTCCG
361TGCAGGCGTT TGCTTCCAGC CTCTCCGGCT CCCTAGCCAC CCAGGCAGTC TTGCTGGGCA
421TAGGGGTGGG GAACGCAAAA GCCACTGTTT CAGCTGCCAC GGCCACCTGG CTCGTGAAAG
481ATTCAACTGG CATGCTGGGC CGCATCGTCT TTGCCTGGTG GAAAGGGAGC AAACTGGACT
541GCAATGCCAA GCAGTGGAGG CTTTTTGCGG ACATCCTCAA TGACGTAGCC ATGTTCCTTG
601AGATTATGGC TCCTGTATGC CCAATCTGTT TCACCATGAC CGTCTCCACC AGCAACCTAG
661CCAAGTGCAT CGTGAGTGTT GCTGGTGGGG CCACTCGGGC TGCCCTGACC GTGCACCAGG
721CTCGGAGGAA CAACATGGCT GACGTGTCAG CCAAGGACAG CAGCCAGGAG ACGCTGGTGA
781ACCTGGCGGG GCTCTTGGTC AGCCTCCTGA TGCTCCCTCT GGTGTCAGGT TGCCCTGGCT
841TCAGCCTTGG ATGTTTCTTC TTCCTCACTG CCCTCCACAT CTACGCCAAC TACCGCGCGG
901TCCGAGCCCT GGTCATGGAG ACCTTGAACG AAGGCCGGCT CCGGCTGGTC CTGAAGCACT
961ACCTTCAGAG GGGAGAGGTA CTCGACCCAA CTGCAGCCAA TCGCATGGAG CCGCTGTGGA
1021CAGGTTTCTG GCCAGCTCCG TCTCTATCCC TGGGGGTCCC CTTACACCGC TTGGTCTCCA
1081GTGTCTTTGA GCTGCAGCAG CTGGTTGAGG GGCACCAAGA ATCCTACCTC CTCTGCTGGG
1141ACCAGTCACA AAACCAGGTA CAGGTAGTTC TGAACCAGAA GGCAGGCCCC AAGACCATCC
1201TAAGGGCCGC CACACATGGG CTGATGCTTG GGGCCCTGCA GGGAGATGGA CCCCTTCCAG
1261CAGAGCTGGA GGAGCTGAGG AACCGGGTGC GGGCAGGTCC TAAGAAAGAG AGCTGGGTCG
1321TCGTCAAGGA GACACACGAA GTGTTGGACA TGCTGTTCCC AAAGTTCTTG AAAGGACTGC
1381AGGATGCCGG CTGGAAGACC GAGAAGCACC AGCTAGAGGT GGATGAGTGG AGGGCCACAT
1441GGCTTCTGTC TCCCGAAAAG AAGGTCTTGT GCCCAACTTT CTTGTACAAA GTtggcatta
1501taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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