Construct: ORF ccsbBroadEn_09059

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010640.1_s300c1, BRDN0000393874
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COLEC12 (81035)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81035 COLEC12 collectin subfamily member 12 NM_130386.3 99.8% 99.5% (many diffs)
2 human 81035 COLEC12 collectin subfamily member 12 XM_011525741.2 97.5% 97% (many diffs)
3 mouse 140792 Colec12 collectin sub-family member 12 NM_130449.2 87.6% 92.1% (many diffs)
4 mouse 140792 Colec12 collectin sub-family member 12 XM_006525640.3 79.6% 83.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2292
ORF length:
2226
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA AGACGACTTC GCAGAGGAGG AGGAGGTGCA ATCCTTCGGT TACAAGCGGT
121TTGGTATTCA GGAAGGAACA CAATGTACCA AATGTAAAAA TAACTGGGCA CTGAAGTTTT
181CTATCATATT ATTATACATT TTGTGTGCCT TGCTAACAAT CACAGTAGCC ATTTTGGGAT
241ATAAAGTTGT AGAGAAAATG GACAATGTCA CAGGTGGCAT GGAAACATCT CGCCAAACCT
301ATGATGACAA GCTCACAGCA GTGGAAAGTG ACCTGGAAAA ATTAGGTGAC CAAACTGGGA
361AGAAAGCTAT CAGCACCAAC TCAGAACTCT CCACCTTCAG ATCAGACATT CTAGATCTCC
421GTCAGCAACT TCGTGAGATT ACAGAAAAAA CCAGCAAGAA CAAGGATACG CTGGAGAAGT
481TACAGGCGAG CGGGGATGCT CTGGTGGACA GGCAGAGTCA ATTGAAAGAA ACTTTGGAGA
541ATAACTCTTT CCTCATCACC ACTGTAAACA AAACCCTCCA GGCGTATAAT GGCTATGTCA
601CGAATCTGCA GCAAGATACC AGCGTGCTCC AGGGCAATCT GCAGAACCAA ATGTATTCTC
661ATAATGTGGT CATCATGAAC CTCAACAACC TGAACCTGAC CCAGGTGCAG CAGAGGAACC
721TCATCACGAA TCTGCAGCGG TCTGTGGATG ACACAAGCCA GGCTATCCAG CGAATCAAGA
781ACGACTTTCA AAATCTGCAG CAGGTTTTTC TTCAAGCCAA GAAGGACACG GATTGGCTGA
841AGGAGAAAGT GCAGAGCTTG CAGACGCTGG CTGCCAACAA CTCTGCGTTG GCCAAAGCCA
901ACAACGACAC CCTGGAGGAT ATGAACAGCC AGCTCAACTC ATTCACAGGT CAGATGGAGA
961ACATCACCAC TATCTCTCAA GCCAACGAGC AGAACCTGAA AGACCTGCAG GACTTACACA
1021AAGATGCAGA GAATAGAACA GCCATCAAGT TCAACCAACT GGAGGAACGC TTCCAGCTCT
1081TTGAGACGGA TATTGTGAAC ATCATTAGCA ATATCAGTTA CACAGCCCAC CACCTGCGGA
1141CGCTGACCAG CAATCTAAAT GAAGTCAGGA CCACTTGCAC AGATACCCTT ACCAAACACA
1201CAGATGATCT GACCTCCTTG AATAATACCC TGGCCAACAT CCGTTTGGAT TCTGTTTCTC
1261TCAGGATGCA ACAAGATTTG ATGAGGTCGA GGTTAGACAC TGAAGTAGCC AACTTATCAG
1321TGATTATGGA AGAAATGAAG CTAGTAGACT CCAAGCATGG TCAGCTCATC AAGAATTTTA
1381CAATACTACA AGGTCCACCG GGCCCCAGGG GTCCAAGAGG TGACAGAGGA TCCCAGGGAC
1441CCCCTGGCCC AACTGGCAAC AAGGGACAGA AAGGAGAGAA GGGGGAGCCT GGACCACCTG
1501GCCCTGCGGG TGAGAGAGGC CCAATTGGAC CAGCTGGTCC CCCCGGAGAG CGTGGCGGCA
1561AAGGATCTAA AGGCTCCCAG GGCCCCAAAG GCTCCCGTGG TTCCCCTGGG AAGCCCGGCC
1621CTCAGGGCCC CAGTGGGGAC CCAGGCCCCC CGGGCCCACC AGGCAAAGAG GGACTCCCCG
1681GCCCTCAGGG CCCTCCTGGC TTCCAGGGAC TTCAGGGCAC CGTTGGGGAG CCTGGGGTGC
1741CTGGACCTCG GGGACTGCCA GGCTTGCCTG GGGTACCAGG CATGCCAGGC CCCAAGGGCC
1801CCCCCGGCCC TCCTGGCCCA TCAGGAGCGG TGGTGCCCCT GGCCCTGCAG AATGAGCCAA
1861CCCCGGCACC GGAGGACAAT AGCTGCCCGC CTCACTGGAA GAACTTCACA GACAAATGCT
1921ACTATTTTTC AGTTGAGAAA GAAATTTTTG AGGATGCAAA GCTTTTCTGT GAAGACAAGT
1981CTTCACATCT TGTTTTCATA AACACTAGAG AGGAACAGCA ATGGATAAAA AAACAGATGG
2041TAGGGAGAGA GAGCCACTGG ATCGGCCTCA CAGACTCAGA GCGTGAAAAT GAATGGAAGT
2101GGCTGGATGG GACATCTCCA GACTACAAAA ATTGGAAAGC TGGACAGCCG GATAACTGGG
2161GTCATGGCCA TGGGCCAGGA GAAGACTGTG CTGGGTTGAT TTATGCTGGG CAGTGGAACG
2221ATTTCCAATG TGAAGACGTC AATAACTTCA TTTGCGAAAA AGACAGGGAG ACAGTACTGT
2281CATCTGCATT ATACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
2341caatttgttg caacgaac

Download FASTA (ORF) (Full)

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