Construct: ORF ccsbBroadEn_09059
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010640.1_s300c1, BRDN0000393874
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COLEC12 (81035)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81035 | COLEC12 | collectin subfamily member 12 | NM_130386.3 | 99.8% | 99.5% | (many diffs) |
| 2 | human | 81035 | COLEC12 | collectin subfamily member 12 | XM_011525741.2 | 97.5% | 97% | (many diffs) |
| 3 | mouse | 140792 | Colec12 | collectin sub-family member 12 | NM_130449.2 | 87.6% | 92.1% | (many diffs) |
| 4 | mouse | 140792 | Colec12 | collectin sub-family member 12 | XM_006525640.3 | 79.6% | 83.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2292
- ORF length:
- 2226
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AGACGACTTC GCAGAGGAGG AGGAGGTGCA ATCCTTCGGT TACAAGCGGT 121 TTGGTATTCA GGAAGGAACA CAATGTACCA AATGTAAAAA TAACTGGGCA CTGAAGTTTT 181 CTATCATATT ATTATACATT TTGTGTGCCT TGCTAACAAT CACAGTAGCC ATTTTGGGAT 241 ATAAAGTTGT AGAGAAAATG GACAATGTCA CAGGTGGCAT GGAAACATCT CGCCAAACCT 301 ATGATGACAA GCTCACAGCA GTGGAAAGTG ACCTGGAAAA ATTAGGTGAC CAAACTGGGA 361 AGAAAGCTAT CAGCACCAAC TCAGAACTCT CCACCTTCAG ATCAGACATT CTAGATCTCC 421 GTCAGCAACT TCGTGAGATT ACAGAAAAAA CCAGCAAGAA CAAGGATACG CTGGAGAAGT 481 TACAGGCGAG CGGGGATGCT CTGGTGGACA GGCAGAGTCA ATTGAAAGAA ACTTTGGAGA 541 ATAACTCTTT CCTCATCACC ACTGTAAACA AAACCCTCCA GGCGTATAAT GGCTATGTCA 601 CGAATCTGCA GCAAGATACC AGCGTGCTCC AGGGCAATCT GCAGAACCAA ATGTATTCTC 661 ATAATGTGGT CATCATGAAC CTCAACAACC TGAACCTGAC CCAGGTGCAG CAGAGGAACC 721 TCATCACGAA TCTGCAGCGG TCTGTGGATG ACACAAGCCA GGCTATCCAG CGAATCAAGA 781 ACGACTTTCA AAATCTGCAG CAGGTTTTTC TTCAAGCCAA GAAGGACACG GATTGGCTGA 841 AGGAGAAAGT GCAGAGCTTG CAGACGCTGG CTGCCAACAA CTCTGCGTTG GCCAAAGCCA 901 ACAACGACAC CCTGGAGGAT ATGAACAGCC AGCTCAACTC ATTCACAGGT CAGATGGAGA 961 ACATCACCAC TATCTCTCAA GCCAACGAGC AGAACCTGAA AGACCTGCAG GACTTACACA 1021 AAGATGCAGA GAATAGAACA GCCATCAAGT TCAACCAACT GGAGGAACGC TTCCAGCTCT 1081 TTGAGACGGA TATTGTGAAC ATCATTAGCA ATATCAGTTA CACAGCCCAC CACCTGCGGA 1141 CGCTGACCAG CAATCTAAAT GAAGTCAGGA CCACTTGCAC AGATACCCTT ACCAAACACA 1201 CAGATGATCT GACCTCCTTG AATAATACCC TGGCCAACAT CCGTTTGGAT TCTGTTTCTC 1261 TCAGGATGCA ACAAGATTTG ATGAGGTCGA GGTTAGACAC TGAAGTAGCC AACTTATCAG 1321 TGATTATGGA AGAAATGAAG CTAGTAGACT CCAAGCATGG TCAGCTCATC AAGAATTTTA 1381 CAATACTACA AGGTCCACCG GGCCCCAGGG GTCCAAGAGG TGACAGAGGA TCCCAGGGAC 1441 CCCCTGGCCC AACTGGCAAC AAGGGACAGA AAGGAGAGAA GGGGGAGCCT GGACCACCTG 1501 GCCCTGCGGG TGAGAGAGGC CCAATTGGAC CAGCTGGTCC CCCCGGAGAG CGTGGCGGCA 1561 AAGGATCTAA AGGCTCCCAG GGCCCCAAAG GCTCCCGTGG TTCCCCTGGG AAGCCCGGCC 1621 CTCAGGGCCC CAGTGGGGAC CCAGGCCCCC CGGGCCCACC AGGCAAAGAG GGACTCCCCG 1681 GCCCTCAGGG CCCTCCTGGC TTCCAGGGAC TTCAGGGCAC CGTTGGGGAG CCTGGGGTGC 1741 CTGGACCTCG GGGACTGCCA GGCTTGCCTG GGGTACCAGG CATGCCAGGC CCCAAGGGCC 1801 CCCCCGGCCC TCCTGGCCCA TCAGGAGCGG TGGTGCCCCT GGCCCTGCAG AATGAGCCAA 1861 CCCCGGCACC GGAGGACAAT AGCTGCCCGC CTCACTGGAA GAACTTCACA GACAAATGCT 1921 ACTATTTTTC AGTTGAGAAA GAAATTTTTG AGGATGCAAA GCTTTTCTGT GAAGACAAGT 1981 CTTCACATCT TGTTTTCATA AACACTAGAG AGGAACAGCA ATGGATAAAA AAACAGATGG 2041 TAGGGAGAGA GAGCCACTGG ATCGGCCTCA CAGACTCAGA GCGTGAAAAT GAATGGAAGT 2101 GGCTGGATGG GACATCTCCA GACTACAAAA ATTGGAAAGC TGGACAGCCG GATAACTGGG 2161 GTCATGGCCA TGGGCCAGGA GAAGACTGTG CTGGGTTGAT TTATGCTGGG CAGTGGAACG 2221 ATTTCCAATG TGAAGACGTC AATAACTTCA TTTGCGAAAA AGACAGGGAG ACAGTACTGT 2281 CATCTGCATT ATACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 2341 caatttgttg caacgaac