Construct: ORF ccsbBroadEn_09066
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004984.1_s300c1, BRDN0000386076
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMX1 (81542)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81542 | TMX1 | thioredoxin related transme... | NM_030755.5 | 99.4% | 98.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 906
- ORF length:
- 840
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GCCCTCCGGG AGTCTTGCAG TTCCCCTGGC AGTCATGGTG CCGTTGCTTT 121 GGGGTGCTCC CTGGACGCAC GGGCGGCGGA GCAACGTTCG CGTCATCACG GACGAGAACT 181 GGAGAGAACT GCTGGAAGGA GACTGGATGA TAGAATTTTA TGCCCCGTGG TGCCCTGCTT 241 GTCAAAATCT TCAACCGGAA TGGGAAAGTT TTGCTGAATG GGGAGAAGAT CTTGAGGTTA 301 ATATTGCGAA AGTAGATGTC ACAGAGCAGC CAGGACTGAG TGGACGGTTT ATCATAAATG 361 CTCTTCCTAC TATTTATCAT TGTAAAGATG GTGAATTTAG GCGCTATCAG GGTCCAAGGA 421 CTAAGAAGGA CTTCATAAAC TTTATAAGTG ATAAAGAGTG GAAGAGTATT GAGCCCGTTT 481 CATCATGGTT TGGTCCAGGT TCTGTTCTGA TGAGTAGTAT GTCAGCACTC TTTCAGCTAT 541 CTATGTGGAT CAGGACGTGC CATAACTACT TTATTGAAGA CCTTGGATTG CCAGTGTGGG 601 GATCATATAC TGTTTTTGCT TTAGCAACTC TGTTTTCCGG ACTGTTATTA GGACTCTGTA 661 TGATATTTGT GGCAGATTGC CTTTGTCCTT CAAAAAGGCG CAGACCACAG CCATACCCAT 721 ACCCTTCAAA AAAATTATTA TCAGAATCTG CACAACCTTT GAAAAAAGTG GAGGAGGAAC 781 AAGAGGCGGA TGAAGAAGAT GTTTCAGAAG AAGAAGCTGA AAGTAAAGAA GGAACAAACA 841 AAGACTTTCC ACAGAATGCC ATAAGACAAC GCTCTCTGGG TCCATCATTG GCCACAGATA 901 AATCCTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 961 gttgcaacga ac