Construct: ORF ccsbBroadEn_09138
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010916.1_s300c1, BRDN0000385754
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IFI27L2 (83982)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83982 | IFI27L2 | interferon alpha inducible ... | NM_032036.3 | 99.2% | 99.2% | 13G>A;15A>T;372G>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 456
- ORF length:
- 390
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GAAACGGACT GCTGCTGCTG CAGTGGGAGG AGCCCTGGCA GTGGGGGCTG 121 TGCCCGTGGT GCTCAGTGCC ATGGGCTTCA CTGGGGCAGG AATCGCCGCG TCCTCCATAG 181 CAGCCAAGAT GATGTCCGCA GCAGCCATTG CCAACGGGGG TGGTGTTTCT GCGGGGAGCC 241 TGGTGGCTAC TCTGCAGTCC GTGGGGGCAG CTGGACTCTC CACATCATCC AACATCCTCC 301 TGGCCTCTGT TGGGTCAGTG TTGGGGGCCT GCTTGGGGAA TTCACCTTCT TCTTCTCTCC 361 CAGCTGAACC CGAGGCTAAA GAAGATGAGG CAAGAGAAAA TGTACCCCAA GGTGAACCTC 421 CAAAACCCCC ACTCAAATCA GAGAAACATG AGGAATACCC AACTTTCTTG TACAAAGTtg 481 gcattataag aaagcattgc ttatcaattt gttgcaacga ac