Construct: ORF ccsbBroadEn_09414
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017748.1_s300c1, BRDN0000396805
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OMA1 (115209)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 115209 | OMA1 | OMA1 zinc metallopeptidase | NM_145243.5 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1638
- ORF length:
- 1572
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CTTCATCTGT GGATTGCAGT CTGCTGCTAG AAACCATGTT TTCTTCCGAT 121 TTAATTCACT GTCTAACTGG AGAAAATGTA ACACATTAGC ATCCACCTCA CGGGGCTGTC 181 ATCAAGTACA AGTTAACCAT ATAGTAAATA AGTATCAGGG ACTGGGAGTA AATCAGTGTG 241 ACAGGTGGAG TTTTCTGCCT GGAAACTTTC ATTTTTATAG TACTTTTAAC AACAAAAGAA 301 CAGGAGGCCT CTCAAGTACC AAAAGTAAGG AAATTTGGAG GATTACCAGC AAATGTACTG 361 TATGGAATGA TGCTTTTTCA AGACAGCTGC TAATAAAAGA AGTTACAGCA GTCCCTAGTC 421 TGTCAGTATT GCATCCTCTA AGCCCTGCTT CCATAAGAGC TATTAGGAAT TTCCATACTT 481 CTCCACGGTT TCAAGCTGCT CCGGTTCCTC TCTTGTTGAT GATTCTTAAA CCAGTACAGA 541 AGTTATTTGC AATCATTGTA GGCAGGGGCA TAAGGAAATG GTGGCAGGCA CTTCCTCCTA 601 ACAAGAAGGA AGTAGTTAAA GAAAATATAA GGAAGAATAA ATGGAAGCTA TTCCTTGGTT 661 TGAGTAGTTT TGGATTGCTC TTTGTGGTGT TTTATTTTAC TCACCTGGAA GTAAGTCCAA 721 TCACAGGAAG GAGCAAGCTA CTATTATTGG GGAAAGAACA GTTCAGACTT TTATCGGAAC 781 TGGAATATGA AGCATGGATG GAAGAATTTA AAAATGATAT GCTAACTGAG AAAGATGCCC 841 GATACCTGGC TGTTAAAGAA GTGCTTTGTC ATCTAATTGA ATGCAATAAA GATGTTCCAG 901 GGATCTCTCA GATCAATTGG GTTATTCATG TGGTTGATTC CCCAATTATT AATGCCTTCG 961 TGCTTCCAAA TGGACAAATG TTTGTTTTCA CTGGATTTTT AAATAGTGTA ACCGATATTC 1021 ATCAACTTTC TTTCCTTCTG GGCCATGAAA TAGCACATGC AGTACTTGGG CATGCTGCAG 1081 AAAAGGCTGG CATGGTTCAT TTGTTGGATT TCCTAGGTAT GATTTTCCTC ACAATGATTT 1141 GGGCCATTTG TCCTCGAGAT AGCTTGGCAC TTTTGTGCCA GTGGATACAG TCTAAATTGC 1201 AGGAGTATAT GTTTAATAGA CCATACAGCA GAAAATTGGA GGCCGAAGCT GACAAAATTG 1261 GACTACTGCT TGCTGCAAAG GCTTGTGCAG ACATAAGAGC CAGTTCAGTG TTTTGGCAGC 1321 AAATGGAGTT CGTTGATAGC CTGCATGGCC AACCCAAGAT GCCAGAATGG TTATCTACAC 1381 ACCCTTCTCA TGGCAATCGA GTTGAGTACT TGGATAGACT TATACCTCAG GCTCTCAAAA 1441 TTAGAGAGAT GTGTAATTGT CCACCACTGT CTAATCCAGA CCCTCGATTA CTATTCAAAC 1501 TCAGCACGAA GCATTTTCTT GAAGAATCAG AGAAAGAAGA CCTAAATATC ACGAAGAAAC 1561 AGAAAATGGA TACTCTTCCT ATTCAAAAAC AGGAGCAAAT ACCATTAACA TACATAGTTG 1621 AGAAAAGAAC GGGCAGTTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1681 gcttatcaat ttgttgcaac gaac