Construct: ORF ccsbBroadEn_09555

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007397.1_s300c1, BRDN0000457396
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR36 (134430)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 134430 WDR36 WD repeat domain 36 NM_139281.2 99.9% 100% 2142C>G
2 mouse 225348 Wdr36 WD repeat domain 36 NM_001110015.1 82% 83.7% (many diffs)
3 mouse 225348 Wdr36 WD repeat domain 36 NM_001110016.1 80.5% 81.7% (many diffs)
4 mouse 225348 Wdr36 WD repeat domain 36 XM_006525847.3 80.4% 81.7% (many diffs)
5 mouse 225348 Wdr36 WD repeat domain 36 NM_144863.4 54.9% 55% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2922
ORF length:
2853
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTGTTGCACT GAGGGCAGTC TCCGGAAACG CGATTCGCAG CGGGCGCCGG
121AAGCGGTGTT GTGTCTGCAG CTCTGGCAGA GGACTGTTCC ACTAGACACG CTGAAGGGAC
181TGGGTACGTG TTTTCCTTCA GGACCAGAGC TGAGAGGAGC TGGGATCGCG GCGGCAATGG
241AACGGGCCTC AGAAAGGCGC ACGGCCAGCG CGCTTTTTGC GGGGTTCCGG GCCTTGGGAC
301TTTTCAGCAA CGACATTCCA CACGTGGTGC GGTTCAGCGC GCTCAAGCGC CGGTTCTATG
361TAACAACCTG CGTGGGCAAG AGTTTCCACA CCTATGACGT TCAGAAACTT AGTCTGGTTG
421CAGTAAGTAA TTCTGTTCCA CAGGATATCT GCTGTATGGC AGCTGATGGC AGATTAGTCT
481TTGCTGCTTA TGGAAATGTT TTCTCTGCAT TTGCCCGTAA TAAAGAGATA GTACATACCT
541TTAAGGGTCA TAAGGCAGAA ATCCATTTCT TGCAACCCTT TGGAGACCAC ATTATCTCTG
601TTGATACTGA TGGCATTCTT ATTATTTGGC ACATATATTC AGAAGAAGAA TACCTGCAGT
661TGACTTTTGA TAAATCAGTA TTTAAAATTT CTGCAATTTT GCATCCAAGT ACCTACTTGA
721ATAAAATACT TCTGGGCAGT GAACAAGGAA GCCTGCAGTT GTGGAATGTA AAATCCAATA
781AACTTCTATA TACATTTCCA GGATGGAAAG TTGGAGTGAC AGCTCTTCAG CAGGCACCAG
841CCGTGGATGT TGTTGCTATT GGTCTTATGT CAGGTCAAGT TATCATTCAC AACATTAAAT
901TTAATGAAAC ATTAATGAAG TTTCGTCAAG ACTGGGGACC CATTACTTCA ATTTCATTTC
961GCACAGATGG TCATCCAGTA ATGGCAGCTG GAAGCCCATG TGGCCATATT GGACTCTGGG
1021ATCTAGAAGA CAAAAAATTA ATCAACCAAA TGAGAAATGC ACACTCTACA GCAATTGCCG
1081GACTGACATT TCTCCATAGA GAGCCACTTC TTGTCACAAA TGGCGCTGAC AATGCTCTTA
1141GGATATGGAT ATTTGATGGT CCTACAGGTG AAGGCCGACT TTTGAGATTC AGAATGGGTC
1201ATAGTGCTCC TCTTACCAAT ATCAGATATT ATGGACAGAA TGGACAGCAG ATTCTAAGTG
1261CAAGTCAAGA TGGAACTCTT CAGTCATTTT CCACGGTACA TGAAAAATTC AATAAGAGCT
1321TGGGACATGG ATTAATAAAT AAAAAGAGAG TTAAACGTAA AGGACTTCAG AATACCATGT
1381CAGTGAGACT TCCACCCATC ACAAAGTTTG CAGCAGAGGA AGCTCGTGAA AGTGACTGGG
1441ATGGTATCAT TGCTTGCCAT CAAGGTAAGC TATCTTGCTC AACCTGGAAT TATCAGAAAT
1501CTACAATAGG CGCTTACTTT CTCAAGCCAA AAGAGTTGAA GAAAGATGAC ATAACTGCAA
1561CAGCAGTGGA TATAACTTCT TGTGGAAACT TTGCTGTAAT TGGCCTCTCA TCAGGAACTG
1621TAGATGTATA TAACATGCAG TCTGGCATAC ATCGAGGAAG TTTTGGCAAG GATCAAGCTC
1681ACAAGGGATC TGTTAGAGGT GTCGCAGTGG ATGGATTAAA CCAGTTGACA GTTACAACTG
1741GTAGTGAAGG ATTACTCAAA TTCTGGAACT TTAAAAACAA AATTTTAATC CATTCTGTGA
1801GCCTCAGTTC ATCTCCAAAT ATCATGTTGC TACATAGGGA CAGTGGCATT CTGGGACTCG
1861CCTTGGATGA CTTCTCCATT AGTGTTCTGG ACATAGAAAC TAGGAAGATT GTCAGAGAGT
1921TTTCTGGACA CCAAGGCCAA ATAAATGACA TGGCTTTTAG TCCTGATGGT CGTTGGTTAA
1981TAAGTGCTGC GATGGATTGC TCTATTAGGA CTTGGGACCT TCCTTCTGGG TGCCTTATAG
2041ACTGCTTTTT GTTGGACTCG GCTCCTCTCA ATGTTTCTAT GTCTCCTACT GGAGACTTTC
2101TGGCAACTTC CCATGTGGAC CACCTTGGAA TTTATCTATG GTCCAATATT TCCCTGTATT
2161CAGTTGTTTC ATTACGGCCA CTTCCTGCAG ATTATGTCCC TTCAATAGTG ATGCTTCCTG
2221GTACTTGTCA AACCCAAGAT GTAGAAGTAT CAGAAGAAAC AGTAGAACCA AGTGATGAAT
2281TGATAGAATA TGATTCGCCA GAACAGTTGA ATGAGCAATT GGTGACTCTT TCACTTCTTC
2341CTGAATCACG ATGGAAAAAC CTTCTTAACC TTGATGTTAT TAAGAAAAAG AATAAACCAA
2401AGGAACCACC CAAAGTACCC AAATCAGCAC CATTTTTCAT TCCAACAATT CCTGGCCTTG
2461TACCCAGATA TGCTGCACCT GAACAAAATA ATGATCCCCA GCAGTCTAAA GTGGTAAATC
2521TTGGAGTTTT GGCTCAAAAA TCAGATTTCT GCTTGAAACT TGAAGAAGGA CTGGTAAATA
2581ATAAGTATGA CACTGCTCTC AACCTTCTGA AAGAATCAGG CCCATCAGGA ATTGAAACAG
2641AGCTGCGAAG CTTGTCTCCT GATTGTGGTG GGTCCATAGA AGTTATGCAG AGCTTCTTGA
2701AAATGATTGG GATGATGCTG GACAGAAAGC GTGATTTTGA GTTAGCCCAG GCATACCTTG
2761CATTGTTTCT AAAGTTACAC CTTAAAATGC TTCCTTCAGA GCCAGTACTC CTAGAAGAAA
2821TAACAAATTT GTCATCCCAG GTGGAAGAAA ACTGGACCCA TTTGCAATCA CTCTTCAATC
2881AAAGCATGTG TATTTTAAAT TATCTCAAAA GTGCTTTGTT GTTGCCAACT TTCTTGTACA
2941AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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