Construct: ORF ccsbBroadEn_09648

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012054.1_s300c1, BRDN0000386523
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF548 (147694)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 147694 ZNF548 zinc finger protein 548 NM_152909.3 99.8% 99.6% 172G>T;217G>A
2 human 147694 ZNF548 zinc finger protein 548 XM_017026316.1 99% 98.5% (many diffs)
3 human 147694 ZNF548 zinc finger protein 548 NM_001172773.2 97.6% 96.8% 14_49del;208G>T;253G>A
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1665
ORF length:
1599
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA CCTGACTGAG GGCCGTGTGG TCTTTGAGGA CGTGGCCATA TATTTCTCCC
121AGGAGGAGTG GGGGCACCTT GATGAGGCTC AGAGATTGCT GTACCGTGAT GTGATGCTGG
181AGAATTTGGC CCTTTTGTCC TCACTAGGTT CTTGGCATGG AGCTGAGGAT GAGGAGTCAC
241CTTCACAGCA AGGTTTTTCT GTAGGAGTGT CAGAGGTTAC AACTTCAAAG CCCTGTCTGT
301CCAGCCAGAA GGTCCACCCT AGTGAGACAT GTGGCCCACC CTTGAAAGAC ATTCTGTGCC
361TGGTTGAGCA CAATGGAATT CATCCTGAGC AACACATATA TATTTGTGAG GCAGAGCTTT
421TTCAGCACCC AAAGCAGCAA ATTGGAGAAA ATCTTTCCAG AGGGGATGAT TGGATACCTT
481CATTTGGGAA GAACCACAGA GTTCACATGG CAGAGGAGAT CTTCACATGC ATGGAGGGCT
541GGAAGGACTT ACCAGCCACC TCATGCCTTC TCCAGCACCA GGGCCCTCAA AGCGAGTGGA
601AGCCATACAG GGACACAGAG GACAGAGAAG CCTTTCAGAC TGGACAAAAT GATTACAAAT
661GTAGTGAATG TGGGAAAACC TTCACCTGCA GCTATTCATT TGTTGAGCAC CAGAAAATCC
721ACACAGGAGA AAGGTCTTAT GAATGTAACA AATGTGGGAA ATTCTTTAAG TACAGTGCCA
781ATTTCATGAA ACATCAGACA GTTCACACTA GTGAAAGGAC TTATGAGTGC AGAGAATGTG
841GAAAATCCTT TATGTACAAC TACCGACTCA TGAGACATAA GCGAGTTCAC ACTGGAGAAA
901GGCCTTATGA GTGCAACACA TGTGGGAAAT TCTTTCGGTA CAGCTCCACA TTTGTTAGAC
961ATCAGAGAGT TCACACCGGA GAAAGGCCGT ATGAGTGCAG GGAATGTGGG AAATTCTTTA
1021TGGACAGCTC CACACTCATT AAACATCAGA GAGTTCACAC CGGAGAAAGA CCTTATAAGT
1081GCAATGATTG TGGGAAATTT TTTAGGTATA TCTCCACACT CATTAGACAT CAGAGAATTC
1141ACACTGGAGA AAGGCCTTAT GAGTGCAGTG TATGTGGGGA ATTGTTTAGG TACAACTCCA
1201GCCTTGTTAA ACATTGGAGA AATCACACTG GAGAAAGGCC TTATAAATGC AGTGAATGTG
1261GGAAATCATT TAGGTACCAC TGCAGGCTCA TTAGACACCA GAGAGTCCAC ACGGGAGAAA
1321GGCCTTATGA GTGCAGCGAA TGCGGGAAAT TCTTTCGTTA CAACTCCAAC CTCATTAAAC
1381ATTGGAGAAA TCACACTGGA GAAAGGCCTT ACGAGTGCAG AGAGTGTGGG AAAGCCTTTA
1441GCCACAAGCA TATACTTGTT GAGCACCAGA AAATCCACAG TGGAGAAAGA CCTTATGAGT
1501GCAGCGAATG CCAGAAGGCC TTTATTAGAA AGTCTCACCT GGTTCATCAC CAGAAAATCC
1561ACAGTGAAGA GAGGCTTGTG TGCTCCATGA ATGTGGGGAA TTCTTTAGCT AAAACTCCAA
1621CCTCATTAAA CATCAGAGAT TTCACAATGG AGAAAGTTTA CCATTGCCCA ACTTTCTTGT
1681ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)