Construct: ORF ccsbBroadEn_09691
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004736.1_s300c1, BRDN0000387931
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ODAPH (152816)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 152816 | ODAPH | odontogenesis associated ph... | NM_178497.4 | 100% | 100% | |
| 2 | human | 152816 | ODAPH | odontogenesis associated ph... | NM_001206981.2 | 73.8% | 23.8% | 67_110del;435_528del |
| 3 | human | 152816 | ODAPH | odontogenesis associated ph... | XM_011531668.2 | 73.8% | 23.8% | 67_110del;435_528del |
| 4 | human | 152816 | ODAPH | odontogenesis associated ph... | NM_001257072.1 | 65.3% | 65.3% | 204_205ins135 |
| 5 | human | 152816 | ODAPH | odontogenesis associated ph... | NR_046430.2 | 12.8% | (many diffs) | |
| 6 | human | 152816 | ODAPH | odontogenesis associated ph... | NR_046429.2 | 12.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 459
- ORF length:
- 390
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTCGCAGA CACTGCTTCT CCTACTGGTT ACTGGTATGC TGGTTGGTGG 121 TAACTGTGGC AGAAGGACAA GAAGAGGTAT TTACGCCTCC TGGAGATTCA CAAAATAATG 181 CGGACGCTAC CGACTGCCAG ATCTTTACAC TCACCCCTCC ACCTGCCCCG AGGAGTCCGG 241 TCACAAGGGC CCAGCCCATC ACAAAGACAC CCAGGTGTCC CTTCCATTTT TTTCCACGAA 301 GGCCCAGAAT CCATTTTAGG TTTCCAAACA GACCTTTCGT CCCTTCAAGG TGTAACCACC 361 GTTTTCCATT CCAGCCATTT TATTGGCCAC ACCGTTACCT TACTTATAGG TATTTCCCCA 421 GAAGAAGACT CCAGAGAGGA AGCTCATCTG AGGAAAGCTT GCCAACTTTC TTGTACAAAG 481 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac