Construct: ORF ccsbBroadEn_09796
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000890.1_s300c1, BRDN0000395047
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NLRP7 (199713)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 199713 | NLRP7 | NLR family pyrin domain con... | NM_001127255.1 | 99.8% | 99.7% | (many diffs) |
| 2 | human | 199713 | NLRP7 | NLR family pyrin domain con... | XM_006723075.3 | 99.8% | 99.7% | (many diffs) |
| 3 | human | 199713 | NLRP7 | NLR family pyrin domain con... | XM_006723076.3 | 99.8% | 99.7% | (many diffs) |
| 4 | human | 199713 | NLRP7 | NLR family pyrin domain con... | XM_011526599.2 | 99.8% | 99.7% | (many diffs) |
| 5 | human | 199713 | NLRP7 | NLR family pyrin domain con... | XM_011526596.2 | 97.1% | 97% | (many diffs) |
| 6 | human | 199713 | NLRP7 | NLR family pyrin domain con... | NM_139176.3 | 97.1% | 97% | (many diffs) |
| 7 | human | 199713 | NLRP7 | NLR family pyrin domain con... | NM_206828.3 | 94.3% | 94.2% | (many diffs) |
| 8 | human | 199713 | NLRP7 | NLR family pyrin domain con... | XM_011526601.2 | 91.8% | 91.7% | (many diffs) |
| 9 | human | 199713 | NLRP7 | NLR family pyrin domain con... | XR_935761.1 | 79.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3180
- ORF length:
- 3111
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAGAAAG 61 TTGGCACCAT GACATCGCCC CAGCTAGAGT GGACTCTGCA GACCCTTCTG GAGCAGCTGA 121 ACGAGGATGA ATTAAAGAGT TTCAAATCCC TTTTATGGGC TTTTCCCCTC GAAGACGTGC 181 TACAGAAGAC CCCATGGTCT GAGGTGGAAG AGGCTGATGG CAAGAAACTG GCAGAAATTC 241 TGGTCAACAC CTCCTCAGAA AATTGGATAA GGAATGCGAC TGTGAACATC TTGGAAGAGA 301 TGAATCTCAC GGAATTGTGT AAGATGGCAA AGGCTGAGAT GATGGAGGAC GGACAGGTGC 361 AAGAAATAGA TAATCCTGAG CTGGGAGATG CAGAAGAAGA CTCGGAGTTA GCAAAGCCAG 421 GTGAAAAGGA AGGATGGAGA AATTCAATGG AGAAACAATC TTTGGTCTGG AAGAACACCT 481 TTTGGCAAGG AGACATTGAC AATTTCCATG ACGACGTCAC TCTGAGAAAC CAACGGTTCA 541 TTCCATTCTT GAATCCCAGA ACACCCAGGA AGCTAACACC TTACACGGTG GTGCTGCACG 601 GCCCCGCAGG CGTGGGGAAA ACCACGCTGG CCAAAAAGTG TATGCTGGAC TGGACAGACT 661 GCAACCTCAG CCCGACGCTC AGATACGCGT TCTACCTCAG CTGCAAGGAG CTCAGCCGCA 721 TGGGCCCCTG CAGTTTTGCA GAGCTGATCT CCAAAGACTG GCCTGAATTG CAGGATGACA 781 TTCCAAGCAT CCTAGCCCAA GCACAGAGAA TCCTGTTCGT GGTCGATGGC CTTGATGAGC 841 TGAAAGTCCC ACCTGGGGCG CTGATCCAGG ACATCTGCGG GGACTGGGAG AAGAAGAAGC 901 CGGTGCCCGT CCTCCTGGGG AGTTTGCTGA AGAGGAAGAT GTTACCCAGG GCAGCCTTGC 961 TGGTCACCAC GCGGCCCAGG GCACTGAGGG ACCTCCGGAT CCTGGCGCAG CAGCCGATCT 1021 ACGTAAGGGT GGAGGGCTTC CTGGAGGAGG ACAGGAGGGC CTATTTCCTG AGACACTTTG 1081 GAGACGAGGA CCAAGCCATG CGTGCCTTTG AGCTAATGAG GAGCAACGCG GCCCTGTTCC 1141 AGCTGGGCTC GGCCCCCGCG GTGTGCTGGA TTGTGTGCAC GACTCTGAAG CTGCAGATGG 1201 AGAAGGGGGA GGACCCGGTC CCCACCTGCC TCACCCGCAC GGGGCTGTTC CTGCGTTTCC 1261 TCTGCAGCCG GTTCCCGCAG GGCGCACAGC TGCGGGGCGC GCTGCGGACG CTGAGCCTCC 1321 TGGCCGCGCA GGGCCTGTGG GCGCAGATGT CCGTGTTCCA CCGAGAGGAC CTGGAAAGGC 1381 TCGGGGTGCA GGAGTCCGAC CTCCGTCTGT TCCTGGACGG AGACATCCTC CGCCAGGACA 1441 GAGTCTCCAA AGGCTGCTAC TCCTTCATCC ACCTCAGCTT CCAGCAGTTT CTCACTGCCC 1501 TGTTCTACAC CCTGGAGAAG GAGGAGGGGG AGGACAGGGA CGGCCACGCC TGGGACATCG 1561 GGGACGTACA GAAGCTGCTT TCCGGAGAAG AAAGACTCAA GAACCCCGAC CTGATTCAAG 1621 TAGGACACTT CTTATTCGGC CTCGCTAACG AGAAGAGAGC CAAGGAGTTG GAGGCCACTT 1681 TTGGCTGCCG GATGTCACCG GACATCAAAC AGGAATTGCT GCAATGCAAA GCACATCTTC 1741 ATGCAAATAA GCCCTTATCC GTGACCGACC TGAAGGAGGT CTTGGGCTGC CTGTATGAGT 1801 CTCAGGAGGA GGAGCTGGCG AAGGTGGTGG TGGCCCCGTT CAAGGAAATT TCTATTCACC 1861 TGACAAATAC TTCTGAAGTG ATGCATTGTT CCTTCAGCCT GAAGCATTGT CAAGACTTGC 1921 AGAAACTCTC ACTGCAGGTA GCAAAGGGGG TGTTCCTGGA GAATTACATG GATTTTGAAC 1981 TGGACATTGA ATTTGAAAGG TGCACTTACC TAACCATTCC GAACTGGGCT CGGCAGGATC 2041 TTCGCTCTCT TCGCCTCTGG ACAGATTTCT GCTCTCTCTT CAGCTCAAAC AGCAACCTCA 2101 AGTTTCTGGA AGTGAAACAA AGCTTCCTGA GTGACTCTTC TGTGCGGATT CTTTGTGACC 2161 ACGTAACCCG TAGCACCTGT CATCTGCAGA AAGTGGAGAT TAAAAACGTC ACCCCTGACA 2221 CCGCGTACCG GGACTTCTGT CTTGCTTTCA TTGGGAAGAA GACCCTCACG CACCTGACCC 2281 TGGCAGGGCA CATCGAGTGG GAACGCACGA TGATGCTGAT GCTGTGTGAC CTGCTCAGAA 2341 ATCATAAATG CAACCTGCAG TACCTGAGGT TGGGAGGTCA CTGTGCCACC CCGGAGCAGT 2401 GGGCTGAATT CTTCTATGTC CTCAAAGCCA ACCAGTCCCT GAAGCACCTG CGTCTCTCAG 2461 CCAATGTGCT CCTGGATGAG GGTGCCATGT TGCTGTACAA GACCATGACA CGCCCAAAAC 2521 ACTTCCTGCA GATGTTGTCG TTGGAAAACT GTCGTCTTAC AGAAGCCAGT TGCAAGGACC 2581 TTGCTGCTGT CTTGGTTGTC AGCAAGAAGC TGACACACCT GTGCTTGGCC AAGAACCCCA 2641 TTGGGGATAC AGGGGTGAAG TTTCTGTGTG AGGGCTTGAG TTACCCTGAT TGTAAACTGC 2701 AGACCTTGGT GTTACAGCAA TGCAGCATAA CCAAGCTTGG CTGTAGATAC CTCTCAGAGG 2761 CGCTCCAAGA AGCCTGCAGC CTCACAAACC TGGACTTGAG TATCAACCAG ATAGCTCGTG 2821 GATTGTGGAT TCTCTGTCAG GCGTTAGAGA ATCCAAACTG TAACCTAAAA CACCTACGCC 2881 TCTGGAGCTG CTCCCTCATG CCTTTCTATT GTCAGCATCT TGGATCTGCT CTCCTCAGCA 2941 ATCAGAAGCT TGAAACTCTG GACCTGGGCC AGAATCATTT GTGGAAGAGT GGCATAATTA 3001 AGCTCTTTGG GGTTCTAAGA CAAAGAACTG GATCCTTGAA GATACTCAGG TTGAAGACCT 3061 ATGAAACTAA TTTGGAAATC AAGAAGCTGT TGGAGGAAGT GAAAGAAAAG AATCCCAAGC 3121 TGACTATTGA TTGCAATGCT TCCGGGGCAA CGGCACCTCC GTGCTGTGAC TTTTTTTGCT 3181 TGCCAACTTT TTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 3241 acgaac