Construct: ORF ccsbBroadEn_09919

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013741.1_s300c1, BRDN0000396837
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CATSPERE (257044)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 257044 CATSPERE catsper channel auxiliary s... NM_173807.5 99.9% 100% 537G>T
2 human 257044 CATSPERE catsper channel auxiliary s... XM_017000947.1 96% 94% (many diffs)
3 human 257044 CATSPERE catsper channel auxiliary s... XM_017000951.1 89.9% 86.6% (many diffs)
4 human 257044 CATSPERE catsper channel auxiliary s... XM_017000943.1 89% 87% (many diffs)
5 human 257044 CATSPERE catsper channel auxiliary s... NM_001130957.2 87.4% 87.2% 537G>T;2491_2506del;2512_2853delinsG
6 human 257044 CATSPERE catsper channel auxiliary s... XR_001737099.1 86% (many diffs)
7 human 257044 CATSPERE catsper channel auxiliary s... XM_011544138.2 84.1% 82.3% (many diffs)
8 human 257044 CATSPERE catsper channel auxiliary s... XM_017000952.1 81.3% 77.7% (many diffs)
9 human 257044 CATSPERE catsper channel auxiliary s... XR_001737096.1 81.1% (many diffs)
10 human 257044 CATSPERE catsper channel auxiliary s... XR_001737095.1 80.4% (many diffs)
11 human 257044 CATSPERE catsper channel auxiliary s... XM_017000945.2 80% 79.9% (many diffs)
12 human 257044 CATSPERE catsper channel auxiliary s... XR_001737100.1 79.9% (many diffs)
13 human 257044 CATSPERE catsper channel auxiliary s... XM_017000953.1 77.5% 74.6% (many diffs)
14 human 257044 CATSPERE catsper channel auxiliary s... XM_017000944.1 76.7% 74.8% (many diffs)
15 human 257044 CATSPERE catsper channel auxiliary s... XR_001737102.1 74.9% (many diffs)
16 human 257044 CATSPERE catsper channel auxiliary s... XM_011544144.2 72.4% 72.2% (many diffs)
17 human 257044 CATSPERE catsper channel auxiliary s... XM_011544145.2 72.4% 72.2% (many diffs)
18 human 257044 CATSPERE catsper channel auxiliary s... XM_017000948.2 72.4% 72.2% (many diffs)
19 human 257044 CATSPERE catsper channel auxiliary s... XR_001737097.1 71.8% (many diffs)
20 human 257044 CATSPERE catsper channel auxiliary s... NM_001242340.1 71.5% 71.3% (many diffs)
21 human 257044 CATSPERE catsper channel auxiliary s... XM_011544139.2 71.5% 71.3% (many diffs)
22 human 257044 CATSPERE catsper channel auxiliary s... XM_011544142.3 71.5% 71.3% (many diffs)
23 human 257044 CATSPERE catsper channel auxiliary s... XM_011544149.2 71.5% 71.3% (many diffs)
24 human 257044 CATSPERE catsper channel auxiliary s... XM_017000946.2 71.5% 71.3% (many diffs)
25 human 257044 CATSPERE catsper channel auxiliary s... XM_017000949.1 71.5% 71.3% (many diffs)
26 human 257044 CATSPERE catsper channel auxiliary s... XM_017000950.1 71.5% 71.3% (many diffs)
27 human 257044 CATSPERE catsper channel auxiliary s... XM_024446278.1 71.5% 71.3% (many diffs)
28 human 257044 CATSPERE catsper channel auxiliary s... XM_011544151.2 67.8% 67.7% 0_1ins558;1933_1948del;1954_2295delinsG
29 human 257044 CATSPERE catsper channel auxiliary s... XR_001737098.1 67.4% (many diffs)
30 human 257044 CATSPERE catsper channel auxiliary s... XR_002956220.1 63.4% (many diffs)
31 human 257044 CATSPERE catsper channel auxiliary s... XR_001737101.1 62.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2562
ORF length:
2496
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC AGCCCGGGAA GTGGCCGTGC TGCTGCTGTG GCTGAGCTGC TATGGCTCCG
121CCCTTTGGAG GTATTCCACT AACAGCCCAA ACTATCGCAT TTTTAGTACC AGAAGTACTA
181TTAAGTTAGA GTATGAAGGA ACATTATTTA CTGAGTGGAG TGTGCCAGAA ACTTGTTTTG
241TGCTAAATAA AAGCTCACCC ACGACAGAAT TGCGTTGTTC CTCACCTGGT GTTCACGCTA
301TAAAACCAAT TGTTACTGGC CCAGATGAAG AAGAACGCTA TTTATTTGTG GAAAGTTCTC
361ATACTTGCTT TCTGTGGTAC TATAGAGTTA GACATTTCTT TAACAACTTT ACCCAGCTTA
421TCACTGTGTG GGCATATGAT CCAGAAAGTG CAGATCCTGA TGAGTTGCTG GGGAATGCAG
481AAGAACCTTC AATAAATTCC ATAGTACTCA GCACACAGAT GGCCACATTG GGACAGAAGC
541CTGTCATACA TACAGTTCTG AAGAGAAAAG TTTATTCTTC AAATGAGAAA ATGAGAAGGG
601GTACCTGGCG TATTGTAGTA CCAATGACAA AAGATGATGC ACTAAAGGAG ATTAGAGGAA
661ACCAAGTTAC TTTTCAGGAT TGCTTTATTG CAGATTTTCT TATTCTGTTG ACTTTTCCTT
721TGTTGACCAT ACCTGAAATT CCTGGTTATT TACCAATCTC CTCACCACGT GGTAGTCAAT
781TAATGGCTTC CTGGGATGCT TGTGTAGTTG CATCTGCTGT TTTGGTGACA GATATGGAGA
841CCTTTCACAC AACTGATTCA TTCAAATCTT GGACCAGAAT CAGAGTGCCT CCAGACATTC
901TGAGTGATGA TGAAAGACGG AGTGTGGCTC ATGTGATCTT ATCGCGGGAT GGAATCGTTT
961TTCTTATAAA TGGTGTTCTT TACATAAAGA GTTTTCGTGG ATTTATAAGA CTGGGAGGAA
1021TTGTAAATCT TCCTGATGGT GGAATTACTG GCATTTCATC AAGAAAATGG TGTTGGGTCA
1081ATTATTTATT AAAGGCTAAA GGAAGAAGAA GCACCTTTGC AGTCTGGACA GAAAATGAAA
1141TTTACCTCGG ATCCATTCTT CTTAAGTTTG CCAGATTAGT AACTACCACA GAACTGAAAA
1201ACATCCTAAG TCTATCGGTG ACTGCTACTC TGACCATAGA CAGGGTTGAG TATACAGGAC
1261ACCCTCTGGA GATTGCTGTG TTTTTAAATT ATTGCACTGT ATGTAACGTC ACCAAAAAGA
1321TTTTCTTAGT GATATATAAT GAAGATACAA AACAGTGGGT TTCCCAAGAC TTTACATTAG
1381ATGCCCCTAT TGACAGTGTT ACCATGCCAC ATTTTACATT TTCAGCACTG CCAGGATTAC
1441TGCTATGGAA CAAGCATAGT ATCTACTATT GTTACCATAA TTTCACCTTT ACTGGGATTT
1501TACAGACACC TGCAGGACAT GGAAATCTAT CAATGCTATC AAATGACAGC ATTATTCATG
1561AAGTTTTCAT AGATTATTAT GGAGATATTT TGGTAAAAAT GGAAAATAAT GTAATATTTT
1621ATTCCAAGAT TAATACTAGA GATGCAGTAA AGCTGCATTT ATGGACAAAT TACACAACAA
1681GAGCATTCAT TTTCTTAAGT ACATCTGGTC AAACATATTT CCTGTATGCT TTGGATGATG
1741GCACAATACA AATACAGGAC TATCCCTTAC ATCTGGAAGC ACAAAGTATA GCTTTCACAA
1801CAAAAGACAA ATGCCCATAC ATGGCATTTC ATAACAATGT TGCTCATGTT TTTTACTTTT
1861TGGACAAGGG AGAGGCTCTG ACAGTTTGGA CTCAGATCGT CTATCCAGAA AACACTGGTC
1921TGTATGTTAT TGTGGAATCT TATGGCCCAA AAATATTACA AGAGAGTCAT GAGATTTCCT
1981TTGAAGCTGC CTTTGGATAC TGCACCAAAA CTCTGACACT AACATTTTAT CAGAATGTAG
2041ATTATGAGAG AATATCTGAT TACTTTGAGA CACAAGACAA GCACACGGGT CTTGTGCTGG
2101TTCAGTTTCG ACCTAGTGAA TATTCAAAAG CATGTCCAAT AGCCCAAAAG GTGTTCCAAA
2161TAGCTGTTGG CTGTGATGAT AAAAAATTCA TTGCAATTAA AGGATTTAGT AAAAAAGGAT
2221GTCATCACCA TGATTTTTCA TACGTGATTG AAAAGTCATA TCTGAGGCAT CAGCCATCGA
2281AAAACTTGAG AGTAAGGTAT ATTTGGGGAG AATATGGCTG CCCTCTGAGG CTTGACTTCA
2341CAGAAAAGTT TCAACCTGTG GTTCAACTAT TTGATGATAA TGGCTATGTT AAAGACGTTG
2401AAGCAAATTT CATAGTGTGG GAAATACACG GCAGGGATGA CTATAGCTTT AATAATACTA
2461TGGCACAGAG TGGTTGTTTA CATGAAGCAC AGACATGGAA GTCAATGATT GAACTTAACA
2521AGCACCTCCC ACTAGAAGAA GTCTGGGGAC CTGAGTTTCT GTACCCAACT TTCTTGTACA
2581AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)