Construct: ORF ccsbBroadEn_09919
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013741.1_s300c1, BRDN0000396837
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CATSPERE (257044)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 257044 | CATSPERE | catsper channel auxiliary s... | NM_173807.5 | 99.9% | 100% | 537G>T |
2 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000947.1 | 96% | 94% | (many diffs) |
3 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000951.1 | 89.9% | 86.6% | (many diffs) |
4 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000943.1 | 89% | 87% | (many diffs) |
5 | human | 257044 | CATSPERE | catsper channel auxiliary s... | NM_001130957.2 | 87.4% | 87.2% | 537G>T;2491_2506del;2512_2853delinsG |
6 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XR_001737099.1 | 86% | (many diffs) | |
7 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_011544138.2 | 84.1% | 82.3% | (many diffs) |
8 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000952.1 | 81.3% | 77.7% | (many diffs) |
9 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XR_001737096.1 | 81.1% | (many diffs) | |
10 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XR_001737095.1 | 80.4% | (many diffs) | |
11 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000945.2 | 80% | 79.9% | (many diffs) |
12 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XR_001737100.1 | 79.9% | (many diffs) | |
13 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000953.1 | 77.5% | 74.6% | (many diffs) |
14 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000944.1 | 76.7% | 74.8% | (many diffs) |
15 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XR_001737102.1 | 74.9% | (many diffs) | |
16 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_011544144.2 | 72.4% | 72.2% | (many diffs) |
17 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_011544145.2 | 72.4% | 72.2% | (many diffs) |
18 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000948.2 | 72.4% | 72.2% | (many diffs) |
19 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XR_001737097.1 | 71.8% | (many diffs) | |
20 | human | 257044 | CATSPERE | catsper channel auxiliary s... | NM_001242340.1 | 71.5% | 71.3% | (many diffs) |
21 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_011544139.2 | 71.5% | 71.3% | (many diffs) |
22 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_011544142.3 | 71.5% | 71.3% | (many diffs) |
23 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_011544149.2 | 71.5% | 71.3% | (many diffs) |
24 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000946.2 | 71.5% | 71.3% | (many diffs) |
25 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000949.1 | 71.5% | 71.3% | (many diffs) |
26 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_017000950.1 | 71.5% | 71.3% | (many diffs) |
27 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_024446278.1 | 71.5% | 71.3% | (many diffs) |
28 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XM_011544151.2 | 67.8% | 67.7% | 0_1ins558;1933_1948del;1954_2295delinsG |
29 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XR_001737098.1 | 67.4% | (many diffs) | |
30 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XR_002956220.1 | 63.4% | (many diffs) | |
31 | human | 257044 | CATSPERE | catsper channel auxiliary s... | XR_001737101.1 | 62.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2562
- ORF length:
- 2496
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC AGCCCGGGAA GTGGCCGTGC TGCTGCTGTG GCTGAGCTGC TATGGCTCCG 121 CCCTTTGGAG GTATTCCACT AACAGCCCAA ACTATCGCAT TTTTAGTACC AGAAGTACTA 181 TTAAGTTAGA GTATGAAGGA ACATTATTTA CTGAGTGGAG TGTGCCAGAA ACTTGTTTTG 241 TGCTAAATAA AAGCTCACCC ACGACAGAAT TGCGTTGTTC CTCACCTGGT GTTCACGCTA 301 TAAAACCAAT TGTTACTGGC CCAGATGAAG AAGAACGCTA TTTATTTGTG GAAAGTTCTC 361 ATACTTGCTT TCTGTGGTAC TATAGAGTTA GACATTTCTT TAACAACTTT ACCCAGCTTA 421 TCACTGTGTG GGCATATGAT CCAGAAAGTG CAGATCCTGA TGAGTTGCTG GGGAATGCAG 481 AAGAACCTTC AATAAATTCC ATAGTACTCA GCACACAGAT GGCCACATTG GGACAGAAGC 541 CTGTCATACA TACAGTTCTG AAGAGAAAAG TTTATTCTTC AAATGAGAAA ATGAGAAGGG 601 GTACCTGGCG TATTGTAGTA CCAATGACAA AAGATGATGC ACTAAAGGAG ATTAGAGGAA 661 ACCAAGTTAC TTTTCAGGAT TGCTTTATTG CAGATTTTCT TATTCTGTTG ACTTTTCCTT 721 TGTTGACCAT ACCTGAAATT CCTGGTTATT TACCAATCTC CTCACCACGT GGTAGTCAAT 781 TAATGGCTTC CTGGGATGCT TGTGTAGTTG CATCTGCTGT TTTGGTGACA GATATGGAGA 841 CCTTTCACAC AACTGATTCA TTCAAATCTT GGACCAGAAT CAGAGTGCCT CCAGACATTC 901 TGAGTGATGA TGAAAGACGG AGTGTGGCTC ATGTGATCTT ATCGCGGGAT GGAATCGTTT 961 TTCTTATAAA TGGTGTTCTT TACATAAAGA GTTTTCGTGG ATTTATAAGA CTGGGAGGAA 1021 TTGTAAATCT TCCTGATGGT GGAATTACTG GCATTTCATC AAGAAAATGG TGTTGGGTCA 1081 ATTATTTATT AAAGGCTAAA GGAAGAAGAA GCACCTTTGC AGTCTGGACA GAAAATGAAA 1141 TTTACCTCGG ATCCATTCTT CTTAAGTTTG CCAGATTAGT AACTACCACA GAACTGAAAA 1201 ACATCCTAAG TCTATCGGTG ACTGCTACTC TGACCATAGA CAGGGTTGAG TATACAGGAC 1261 ACCCTCTGGA GATTGCTGTG TTTTTAAATT ATTGCACTGT ATGTAACGTC ACCAAAAAGA 1321 TTTTCTTAGT GATATATAAT GAAGATACAA AACAGTGGGT TTCCCAAGAC TTTACATTAG 1381 ATGCCCCTAT TGACAGTGTT ACCATGCCAC ATTTTACATT TTCAGCACTG CCAGGATTAC 1441 TGCTATGGAA CAAGCATAGT ATCTACTATT GTTACCATAA TTTCACCTTT ACTGGGATTT 1501 TACAGACACC TGCAGGACAT GGAAATCTAT CAATGCTATC AAATGACAGC ATTATTCATG 1561 AAGTTTTCAT AGATTATTAT GGAGATATTT TGGTAAAAAT GGAAAATAAT GTAATATTTT 1621 ATTCCAAGAT TAATACTAGA GATGCAGTAA AGCTGCATTT ATGGACAAAT TACACAACAA 1681 GAGCATTCAT TTTCTTAAGT ACATCTGGTC AAACATATTT CCTGTATGCT TTGGATGATG 1741 GCACAATACA AATACAGGAC TATCCCTTAC ATCTGGAAGC ACAAAGTATA GCTTTCACAA 1801 CAAAAGACAA ATGCCCATAC ATGGCATTTC ATAACAATGT TGCTCATGTT TTTTACTTTT 1861 TGGACAAGGG AGAGGCTCTG ACAGTTTGGA CTCAGATCGT CTATCCAGAA AACACTGGTC 1921 TGTATGTTAT TGTGGAATCT TATGGCCCAA AAATATTACA AGAGAGTCAT GAGATTTCCT 1981 TTGAAGCTGC CTTTGGATAC TGCACCAAAA CTCTGACACT AACATTTTAT CAGAATGTAG 2041 ATTATGAGAG AATATCTGAT TACTTTGAGA CACAAGACAA GCACACGGGT CTTGTGCTGG 2101 TTCAGTTTCG ACCTAGTGAA TATTCAAAAG CATGTCCAAT AGCCCAAAAG GTGTTCCAAA 2161 TAGCTGTTGG CTGTGATGAT AAAAAATTCA TTGCAATTAA AGGATTTAGT AAAAAAGGAT 2221 GTCATCACCA TGATTTTTCA TACGTGATTG AAAAGTCATA TCTGAGGCAT CAGCCATCGA 2281 AAAACTTGAG AGTAAGGTAT ATTTGGGGAG AATATGGCTG CCCTCTGAGG CTTGACTTCA 2341 CAGAAAAGTT TCAACCTGTG GTTCAACTAT TTGATGATAA TGGCTATGTT AAAGACGTTG 2401 AAGCAAATTT CATAGTGTGG GAAATACACG GCAGGGATGA CTATAGCTTT AATAATACTA 2461 TGGCACAGAG TGGTTGTTTA CATGAAGCAC AGACATGGAA GTCAATGATT GAACTTAACA 2521 AGCACCTCCC ACTAGAAGAA GTCTGGGGAC CTGAGTTTCT GTACCCAACT TTCTTGTACA 2581 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac