Construct: ORF ccsbBroadEn_09981
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001160.1_s300c1, BRDN0000387791
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GPRIN3 (285513)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285513 | GPRIN3 | GPRIN family member 3 | NM_198281.3 | 99.9% | 99.7% | 1144T>C;1337T>C |
| 2 | human | 285513 | GPRIN3 | GPRIN family member 3 | XM_005262936.3 | 99.9% | 99.7% | 1144T>C;1337T>C |
| 3 | human | 285513 | GPRIN3 | GPRIN family member 3 | XM_005262937.4 | 99.9% | 99.7% | 1144T>C;1337T>C |
| 4 | human | 285513 | GPRIN3 | GPRIN family member 3 | XM_017008043.1 | 99.9% | 99.7% | 1144T>C;1337T>C |
| 5 | human | 285513 | GPRIN3 | GPRIN family member 3 | XM_017008044.1 | 99.9% | 99.7% | 1144T>C;1337T>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2397
- ORF length:
- 2328
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGGACTGTA CCTGACCCTC TGAGATCAGC TAAAACTTCC CTGATTGCAG 121 CTTCCGGAAA AGAAGACGAT CTAGGAGAGC CACAGGCTGC CTCACCTCGG CATCGACCAG 181 CTCTCCTGTG TAAGAATGCC AATGGCTTTT CAGGTGCCCC TGCAGAACCA GACCTCAGCC 241 CCAGGGCAGC TGCCGAAGCC CTGATGCAGG TTTGTGAGCA TGAGACCACC CAACCAGATA 301 TGTCTTCTCC TGGTGTGTTC AATGAAGTGC AGAAAGCACC TGCCACATTC AACTCTCCCG 361 GCAATCCCCA GCTGCCAGGG AGCAGCCAGC CCGCAGCATC AGCCCCGAGT TCTGCAGCAG 421 GAAGGGATCT TATACACACA CCATTGACAA TGCCCGCCAA TCAGCACACC TGCCAGTCCA 481 TCCCAGGTGA TCAGCCCAAT GCCATCACCT CATCCATGCC TGAAGATTCC CTGATGAGAT 541 CACAGAGAAC CTCAAATAGA GAGCAACCTG AGAAACCAAG TTGTCCTGTG GGAGGCGTCC 601 TCAGTAGCAG CAAAGATCAG GTGTCCTGTG AGTTTCCTTC TCCAGAAACA ATCCAGGGAA 661 CAGTGCAGAC TCCAGTGACA GCAGCCAGGG TGGTCAGTCA CTCATCCTCT CCTGTAGGTG 721 GACCTGAAGG GGAAAGGCAG GGAGCCATCT GTGACTCTGA AATGAGGTCC TGTAAACCTC 781 TAACTAGAGA ATCTGGATGT TCAGAGAACA AGCAGCCCTC TGTCACTGCC TCGGGCCCCC 841 AAGGCACAAC TTCTGTGACA CCTCAACCAA CCCCCCTCAC TAGCGAACCT TCGGCATGTC 901 CCCCAGGTCC AGAGAAGGTG CCGCTGCCAG CACAGCGTCA GATGTCAAGG TTCAAAGAAG 961 CCAGTACGAT GACCAACCAA GCTGAAAGTG AAATCAAGGA AGTTCCCAGC AGGGCTTGGC 1021 AAGATGCGGA GGTGCAGGCA GTGGCGAGTG TCGAGAGCAG ATCCGTCTCC ACCAGCCCCA 1081 GTATCCTCAC TGCATTTCTG AAGGAAAGCC GTGCTCCTGA GCATTTTGAA CAAGAGCAGC 1141 TGCGTGTCAT TTGCCACAGC AGTGGGAGCC ACACACTGGA GCTCTCTGAC AGCACGCTAG 1201 CCCCCCAGGA GCCCAGCCAG TGCCCTGGCA TCATGCCACA GGTGCACATT CAGGCAGCTG 1261 CAGCTGAGTC TACAGCTTTC CAACGGGAAA ATAAACTTGC GAGCCTACCA GGTGGGGTCC 1321 TTAAAACCTC ATCAATCAAT TTGGTCTCCA GTAATGCCCA GCATACGTGT AAAGAAGATG 1381 GGAGGTTAGC AGGAATGACT CCAGCGAGGG AAGAGTCAAC TGCTAAAAAG CTCGCAGGTA 1441 CTAATTCTAG CTCCCTGAAA GCTACCGCCA TTGACCAGAT TTCTATCAGT GCATGCAGTC 1501 AAGCTGAAAC AAGTTATGGA TTGGGGAAAT TTGAAACCAG GCCATCTGAG TTTGCAGAGA 1561 AAACGACAAA CGGCCACAAA ACAGACCCAG ATTGCAAACT ATCTGACTCT TGTGGCTCTA 1621 TCAGCAAAGC TGATCATTCT GGGAGCTTGG ATCCCACTAA TAAAGGAGAT GCAAGGGAAA 1681 AGAAGCCTGC ATCTCCTCAG GTAGTAAAAG AAAAAGAGTC TACTGGCACT GATACCTCGG 1741 ATGCCAAAAC CCTACTGCTC AATCCTAAAT CCCAAGAAAG TGGAGGCACA GAATCAGCTG 1801 CTAATCCTAC ACCCTCCCCA ATTAGGAAGA ACCAGGAGAG CACCTTAGAA GAAAACAGAC 1861 AGACCAAGAC AGCCACCAGC CTGAGCCTGC CATCTGATCC CATGGGTGAC TCCAGCCCAG 1921 GTTCTGGCAA GAAGACCCCA TCTCGCTCCG TCAAAGCCAG CCCACGCAGG CCCAGCCGCG 1981 TCAGCGAGTT CCTCAAGGAG CAAAAGTTAA ATGTGACAGC AGCTGCTGCT CAGGTAGGAC 2041 TCACTCCAGG AGATAAGAAA AAGCAGCTTG GCGCAGACTC CAAGCTCCAG CTGAAACAGT 2101 CCAAGCGTGT CAGGGACGTC GTGTGGGATG AGCAGGGAAT GACCTGGGAA GTGTATGGTG 2161 CATCCTTGGA CGCAGAGTCC CTGGGAATCG CGATCCAGAA CCATTTGCAA AGACAAATCA 2221 GGGAACATGA GAAATTAATC AAAACTCAAA ATAGCCAGAC CCGGAGATCC ATTTCCTCAG 2281 ATACTTCTTC AAATAAGAAG CTCAGAGGAA GGCAGCACAG TGTTTTCCAG TCCATGCTGC 2341 AGAACTTCCG ACGCCCCAAC TGCTGCGTCC GTCCTGCCCC GTCTTCTGTG TTAGATTTGC 2401 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2461 aac