Construct: ORF ccsbBroadEn_10031
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011839.1_s300c1, BRDN0000455827
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR6C4 (341418)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 341418 | OR6C4 | olfactory receptor family 6... | NM_001005494.1 | 99.8% | 99.6% | 109A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 996
- ORF length:
- 927
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAAAACAGA ACCATGTTTG GTGAGTTTAT TCTACTGGGC CTTACAAATC 121 AACCTGAACT CCAAGTGATG ATATTCATCT TTCTGTTCCT CACCTACATG CTAAGTGTCC 181 TAGGAAATCT GACTATTATC ACCCTCACCT TACTAGACCC CCACCTCCAG ACCCCCATGT 241 ATTTCTTCCT CCGGAATTTC TCCTTCTTAG AAATTTCCTT CACATCCATT TTTATTCCCA 301 GATTTCTGAC CAGCATGACA ACAGGAAATA AAGTTATCAG CTTTGCTGGC TGCTTGACTC 361 AGTATTTTTT TGCTATATTT CTTGGAGCTA CCGAGTTTTA CCTCCTGGCC TCCATGTCTT 421 ATGATCGTTA TGTGGCCATC TGCAAACCCT TGCATTACCT GACTATTATG AGCAGCAGAG 481 TCTGCATACA ACTAGTGTTC TGCTCCTGGT TGGGGGGATT CCTAGCAATC TTACCACCAA 541 TCATCCTGAT GACCCAGGTA GATTTCTGTG TCTCCAACAT TCTGAATCAC TATTACTGTG 601 ACTATGGGCC TCTCGTGGAG CTTGCCTGCT CAGACACAAG CCTCTTAGAA CTGATGGTCA 661 TCCTCTTGGC CGTTGTGACT CTCATGGTTA CTCTGGTGCT GGTGACACTT TCTTACACAT 721 ACATTATCAG GACTATTCTG AGGATCCCTT CTGCCCAGCA AAGGACAAAG GCCTTTTCCA 781 CTTGTTCCTC CCACATGATT GTCATCTCCC TCTCTTATGG CAGCTGCATG TTTATGTACA 841 TTAATCCTTC TGCAAAAGAA GGAGGTGCTT TCAACAAAGG AATAGCTGTA CTCATTACTT 901 CGGTTACTCC CTTACTGAAT CCCTTCATAT ATACTTTAAG AAATCAGCAA GTGAAACAAG 961 CTTTCAAGGA CTCAGTCAAA AAGATTGTGA AACTTTTGCC AACTTTCTTG TACAAAGTTG 1021 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac