Construct: ORF ccsbBroadEn_10147
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006872.1_s300c1, BRDN0000391181
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CCL3L3 (414062)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 414062 | CCL3L3 | C-C motif chemokine ligand ... | NM_001001437.4 | 99.2% | 98.9% | 123A>G;272T>C |
| 2 | human | 6349 | CCL3L1 | C-C motif chemokine ligand ... | NM_021006.5 | 99.2% | 98.9% | 123A>G;272T>C |
| 3 | human | 6348 | CCL3 | C-C motif chemokine ligand 3 | NM_002983.3 | 95.6% | 93.5% | (many diffs) |
| 4 | human | 6349 | CCL3L1 | C-C motif chemokine ligand ... | NR_111964.1 | 27.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 345
- ORF length:
- 279
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggCATGCA GGTCTCCACT GCTGCCCTTG CCGTCCTCCT CTGCACCATG GCTCTCTGCA 121 ACCAGGTCCT CTCTGCACCA CTTGCTGCTG ACACGCCGAC CGCCTGCTGC TTCAGCTACA 181 CCTCCCGGCA GATTCCACAG AATTTCATAG CTGACTACTT TGAGACGAGC AGCCAGTGCT 241 CCAAGCCCAG TGTCATCTTC CTAACCAAGA GAGGCCGGCA GGTCTGTGCT GACCCCAGTG 301 AGGAGTGGGT CCAGAAATAC GTCAGTGACC TGGAGCCGAG TGCCTGAGca actttcttgt 361 acaaagttgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c