Construct: ORF ccsbBroadEn_10233
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011850.1_s300c1, BRDN0000394495
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PART1 (25859)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25859 | PART1 | prostate androgen-regulated... | NR_028508.1 | 8.3% | 1_22del;200_2108del | |
| 2 | human | 25859 | PART1 | prostate androgen-regulated... | NR_024617.1 | 7% | 1_241del;419_2495del | |
| 3 | human | 25859 | PART1 | prostate androgen-regulated... | NR_028509.1 | 2.9% | 1_22del;200_5914del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 246
- ORF length:
- 177
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAATGTCAG CTATTTAGGA CAGAAACATC CAAGGCCGTG TCAGAACTCA 121 ATTACGACTA CATATGCATT AAGGCAGGAA CTGGCAGGCC TCAGGGTACG CCAACTATAG 181 GACTCGTGCT TCTCGTACGC TGGGCTATAA TCTATGAAAC TGAGCTCCAG AGCCAGCCAA 241 TCACTTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 301 gttgcaacga ac