Construct: ORF ccsbBroadEn_10281
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008077.1_s300c1, BRDN0000394502
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00923 (91948)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91948 | LINC00923 | long intergenic non-protein... | NR_024173.1 | 26.7% | 1_144del;505_1345del | |
| 2 | human | 91948 | LINC00923 | long intergenic non-protein... | NR_024172.1 | 23.7% | 1_144del;477_648del;677_1517del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 429
- ORF length:
- 360
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGCGGGCC TGCCAAGGGA GAATAAACAG CACCGGCAGC CTGGCACAGA 121 GCTCTGGCGG GAACGTCCAC CAAGATCGGT CAGGCACTCT CATGGCGTCC TCCTGGATAC 181 AGGCTTTTGC TTTTGTTTTT AATTTTGGAG CAGTGAAGCC GAAAGTGAGG AGTGAGGACA 241 AGGAGAAGAC CCATTTGCTC CTGTTCATTC AAACAGCATC TCTTCATTTT GAAATTGGCA 301 AGAGGCAGTT CGGGGCTGTG GCAGGTCCTG TACACCACCT GTTGCCTCCC AAGTCACTGT 361 GCCTTTCTGG CTTTCTTTAC CTATGTCCTG TAAAACGCCA GCAAGAACTC TACATCTTCA 421 ACATTTTGTT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 481 tttgttgcaa cgaac