Construct: ORF ccsbBroadEn_10282
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001062.1_s300c1, BRDN0000387454
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NEURL3 (93082)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 93082 | NEURL3 | neuralized E3 ubiquitin pro... | NM_001285485.2 | 52.2% | 6.2% | 1_61del;473_786del |
| 2 | human | 93082 | NEURL3 | neuralized E3 ubiquitin pro... | XM_011512178.2 | 52.2% | 6.2% | 1_61del;473_786del |
| 3 | human | 93082 | NEURL3 | neuralized E3 ubiquitin pro... | XM_011512179.2 | 52.2% | 6.2% | 1_61del;473_786del |
| 4 | human | 93082 | NEURL3 | neuralized E3 ubiquitin pro... | NR_104346.1 | 24.2% | 1_349del;761_1695del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 477
- ORF length:
- 411
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC GAGGCCAAGG GCGCACAGGT GCGTCTGGAC ACGCGTGGCT GCATCGCGCA 121 CAGGCGCACC ACGTTCCACG ACGGCATCGT GTTCAGCCAG CGGCCGGTGC GCCTGGGCGA 181 GCGTGTGGCG CTGCGAGTGC TGCGGGAGGA GAGCGGCTGG TGCGGCGGCC TCCGCGTGGG 241 CTTCACGCGC CTGGACCCCG CGTGCGTGTC CGTGCCCAGC CTGCCGCCCT TCCTGTGCCC 301 CGACCTGGAG GAGCAGAGCC CGACGTGGGC GGCCGTGCTG CCTGAGGGCT GCGCGCTCAC 361 TGGGGACTTG GTCCGCTTCT GGGTGGACCG CCGCGGCTGC CTCTTCGCCA AGGTCAACGC 421 CGGCTGCCGG CTCCTGCTGC GTGAGGGCGT GCCCGTCGGC GCCCCGCTCT GGGCCGTGCC 481 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 541 aac