Construct: ORF ccsbBroadEn_10355
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009355.1_s300c1, BRDN0000394571
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00298 (339788)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 339788 | LINC00298 | long intergenic non-protein... | NR_015405.1 | 15.6% | 1_144del;484_2165del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 408
- ORF length:
- 339
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTCCCAGGA GCTGCCTATG GGATTCAAGA AAACTGTATG AGAGGAGTAA 121 CATTTGGGCT GGAAGCGAAA ATACAAGTAA ACATATGTCA AATGGGGTCT GGAAAGCAAT 181 CCTCCACAGA AAGAAAGCAG AATCTTCTGG GCATTTCTGA GCAAGTGGAC TTCCTTCAGC 241 TGAGCACAGT CCTCAGGAGA AGCGGACAGG TGCAAAGTGT TGGAAGCCAA CACTCACAGC 301 AGTTGGGGGT TGGAGTGCTC TGGCTTCCAA CAGCATTGAA ACCAACAGCA TTGACTACAG 361 CGAGTTTCTC AATCTTCAGA ACACATCCCA GCCTCCCTGG GGGCTGCTTG CCAACTTTCT 421 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac