Construct: ORF ccsbBroadEn_10365
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013449.1_s300c1, BRDN0000388071
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00671 (388387)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 388387 | LINC00671 | long intergenic non-protein... | NR_027254.1 | 26% | 1_133del;614_1844del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 549
- ORF length:
- 480
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGAAACTGG CCAGATCAAC TGCTGTCACC TTCTAAAGAG AGGGTTTTGC 121 CATGTTGCCA GGCTGGTCTC GAACTCCTGG ACTCAAGTGA TCTGCCTGCC TCAGCCTCCC 181 AAAGTGCTGG AATTATAGGA CCCAGACGGG GAGGAGGAAT GCCAGAGAAG CTGCAGACTC 241 TCCGGCCACG GAGCCTGAGT GGAGCAGAGG TGGCCCACTG TCAGCCACAG GTCAAGTGTC 301 AGGGTGGGGA CGGGGCAGGC TCCACCAGAA GGCGGGGGCA GGCTCCACCA GAAGGCGGGG 361 CCAGACCACA GGGCAAGGTG GAGATGAGTC TGTGGCACCC CCAGGAAGTT TACCAGATTT 421 GCCCCAGAGC TTCTGACCCT TTGGATCTCT CTGGGCTGCA TTCTTCAGGG TCCCATTGCT 481 TCTTTCTTGA AGGTGGAAGG AAATGTTCCC ATCAGAGCCT TCCAACAGGC CACCTTGGGG 541 GCTTCTCCTT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 601 tttgttgcaa cgaac