Construct: ORF ccsbBroadEn_10368
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012998.1_s300c1, BRDN0000390982
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCZ1P-OR7E38P (389538)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 389538 | CCZ1P-OR7E38P | CCZ1P-OR7E38P readthrough | NR_148008.1 | 29.7% | 1_353del;618_888del | |
| 2 | human | 389538 | CCZ1P-OR7E38P | CCZ1P-OR7E38P readthrough | NR_002822.4 | 28.2% | 1_401del;666_936del | |
| 3 | human | 26628 | OR7E47P | olfactory receptor family 7... | NR_120440.1 | 25.4% | (many diffs) | |
| 4 | human | 26628 | OR7E47P | olfactory receptor family 7... | NR_120439.1 | 24.8% | (many diffs) | |
| 5 | human | 26648 | OR7E24 | olfactory receptor family 7... | NM_001079935.1 | 23.8% | 20% | (many diffs) |
| 6 | human | 8587 | OR7E2P | olfactory receptor family 7... | NR_045004.1 | 22.3% | (many diffs) | |
| 7 | human | 10819 | OR7E14P | olfactory receptor family 7... | NR_045002.1 | 21.9% | (many diffs) | |
| 8 | human | 100506759 | OR7E37P | olfactory receptor family 7... | NR_002163.3 | 21.7% | (many diffs) | |
| 9 | human | 10821 | OR7E12P | olfactory receptor family 7... | NR_044999.1 | 21.5% | (many diffs) | |
| 10 | human | 79315 | OR7E91P | olfactory receptor family 7... | NR_002185.3 | 18% | (many diffs) | |
| 11 | human | 219445 | OR7E5P | olfactory receptor family 7... | NR_027688.2 | 12.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 330
- ORF length:
- 264
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CCTGGTCACG GTGCTGGGGA ACCTGCTCAT CATCCTGGCC ATCAGCCCTG 121 ACTCCCACCT CCACACCCCC ATGTACTTCT TCCTCTCCAA CCTGTCCTTG CCTGACATCG 181 GTTTCACCTC CACCACGGTC CCCAAGATGA TTGTGGACAT CCAGTCTCAC AGCAGAGTCA 241 TCTCCTATGC AGGCTGCCTG ACTCAGATGT CTCTCTTTGC CATTTTTGGA GGCATGGAAG 301 AGAGACATGC TCCTGAGTGT GATGGCCTAT GCCCAACTTT CTTGTACAAA GTtggcatta 361 taagaaagca ttgcttatca atttgttgca acgaac