Construct: ORF ccsbBroadEn_10372
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011017.1_s300c1, BRDN0000394283
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01567 (400511)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 400511 | LINC01567 | long intergenic non-protein... | NR_122072.1 | 20.8% | 1_929del;1536_2907del | |
| 2 | human | 105371063 | LOC105371063 | putative uncharacterized pr... | XM_011522781.1 | 12.6% | 9.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 675
- ORF length:
- 606
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTAGTAGAG ACGGGGTTTT GCCATGTTGG CCAGGCTGGT CTCGAACTCC 121 TGAGCTCAAG TGACAAGGCC GCCGGCCTCG ACCTCCCAAA GTGCTGGGAT TACAGGCATG 181 AGCCACCGCG CCTGGCCCCT TTGCTGATTT TTAATCCGCA TCCTTCCACT GTGTTAAGCT 241 GTAACTGTGA ATACAACAGC TTTTTTGAGT TCTGCGATTC TTTGCAGCAA ATCGTCATAC 301 CTGAGCGTGT CTTGGGGACT CCCCGACACA TCTTCCCACT CCCTCTTCTG TTTTCTCACT 361 TCCTCTGGAG TAAACTGAAA GAGGCCCCTG CTTGCCTCTT GCAAGGCAGT TCTGAACACA 421 CTGAGATCAT TTGTGATCTC ATATCCTCTT CTAAGCAATT CATCAAGAAA TTTCTTTCAA 481 ATAAACCCAG TGCTCTTCAT GGAGGTGATG CTGATGAAAA TGACTTTCTC CAGCTTATTA 541 CACGTTTGCA GAAGCTCCTG TTTAAGAGTT TGAGCATGTA TGTGTGTGTG CATATACACC 601 AGCACACACA TGCATGCCCA CAGCTGTCAT GCCTTCACCA GAACCAGGAC GAGGAGTTAT 661 TCTATTGCCA GAATTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 721 tatcaatttg ttgcaacgaa c