Construct: ORF ccsbBroadEn_10516

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017077.1_s300c1, BRDN0000388452
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GMCL2 (64396)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64396 GMCL2 germ cell-less 2, spermatog... NM_001358008.2 99.6% 99.2% (many diffs)
2 human 64395 GMCL1 germ cell-less 1, spermatog... NM_178439.5 92.7% 88.7% (many diffs)
3 human 64395 GMCL1 germ cell-less 1, spermatog... XM_011533033.2 84.3% 80.6% (many diffs)
4 human 64395 GMCL1 germ cell-less 1, spermatog... XM_011533034.2 60% 57% (many diffs)
5 human 64395 GMCL1 germ cell-less 1, spermatog... XM_017004704.2 60% 57% (many diffs)
6 human 64395 GMCL1 germ cell-less 1, spermatog... XM_017004705.1 56.6% 54.5% (many diffs)
7 human 64395 GMCL1 germ cell-less 1, spermatog... XR_001738895.2 35.1% (many diffs)
8 mouse 23885 Gmcl1 germ cell-less, spermatogen... NM_011818.3 84.2% 84.2% (many diffs)
9 mouse 23885 Gmcl1 germ cell-less, spermatogen... XM_006506056.2 47.1% 47.5% (many diffs)
10 mouse 23885 Gmcl1 germ cell-less, spermatogen... XR_377446.3 42.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1644
ORF length:
1578
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG ATCGTCGAGC AGCCGGGTGC TGGGCCAGCC GAGGCGAGCC CTTGCCCAGC
121AGGAACAGGG TGCCAGGGCC AGGGGCTCGG CCCGGAGGCC GGACACTGGA GACGATGCGG
181CGAGCTACGG CTTCTGTTAC TGCCCGGGCA GTCACAAGCG CAAGCGGAGC AGCGGGGCCT
241GCCGCTACTG TGACCCGGAC TCGCACAGGG AGGAGCATGA GGAGGAGGGG GACAAGCAGC
301AGCCGCTCCT CAACACCCCT GCAAGGAAAA AATTAAGGAG TACATCCAAA TATATTTATC
361AAACATTATT TTTGAATGGT GAAAACAGTG ACATTAAGAT TTGTGCTCTA GGAGAAGAAT
421GGCGATTACA CAAAATATAT TTATGTCAAT CTGGCTACTT TTCTAGTATG TTCAGTGGTT
481CTTGGAAAGA ATCCAGCATG AATATTATTG AACTGGAGAT TCCTGACCAG AACATTGATG
541TAGACGCACT GCAGGTTGCG TTTGGTTCAC TGTATCGAGA TGATGTCTTG ATAAAACCCA
601GTCGAGTTGT TGCCATTTTG GCAGCAGCTT GTATGCTGCA GCTGGATGGT TTAATACAGC
661AGTGTGGTGA GACAATGAAG GAAACAATTA ATGTGAAAAC TGTATGCGGT TATTACACAT
721CAGTAGAGAT CTATGGATTA GATTCTGTAA AGAAAAAGTG CCTTGAATGG CTTCTAAACA
781ATTTGATGAC TCACCAGAAT GTTAAACTTT TTAAAGAACT CGGTATAAAT GTCATGAAAC
841AGCTCATTGG TTCCTCTAAC TTATTTGTGA TGCAAGTGGA GATGGATGTA TACACCACTC
901TAAAAAAGTG GATGTTCCTT CAACTTGTGC CTTCTTGGAA TGGATCTTTA AAACAGCTTT
961TGACAGAAAC AGATGTCTGG TTTTCTAAAC AGAGAAAAGA TTTTGAAGGT ATGGCCTTTC
1021TTGAAACTGA ACCAGGAAAA CCATTTGTGT CAGTATTCAG ACATTTAAGG TTACAATATA
1081TTATCAGTGA CCTAGCTTCT GCAAGAATTA TTGAACAAGA TGGTATAGTA CCTTCAGAAT
1141GGCTGTCTTC TGTGTATAAA CAGCAGTGGT TTGCTATGCT GCGGGCAGAA CAAGACCATG
1201AGGTAGGGCC TCAAGAAATC AATAAAGAAG ACCTAGAGGG AAGTAGCATG AGGTGTGGTA
1261GAAAGCTTGC CAAAGATGGT GAATACTACT GGTGTTGGAC GGGTTTTAAC TTCGGCTTTG
1321ACCTACTTGT AATTTACACC AATGGATACA TCATTTTCAA ACGCAATACA CTGAATCAGC
1381CATGCAGCGG GTCTGTCAGT TTACGGCCTC GAAGGAGCAT AGCATTTAGA TTACGCTTGG
1441CTTCTTTTGA TAGTAGTGGA AAACTAGTAT GTAGTAGAAC AACTGGCTAT CAAATACTTA
1501TACTTAAAAA GGATCAGGAA CAAGTGGTGA TGAACTTGGA CAGCAGGTTT CTGACCTTCC
1561CTTTATATAT CTGCTGTAAC TTCTTGTATA TATCACCAGA AAAAGGAATT GAAAATAATC
1621GCCACCCAGA AGATCCAGAA AACTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1681agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)