Construct: ORF ccsbBroadEn_10519
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000557.1_s300c1, BRDN0000397958
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR7E91P (79315)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8587 | OR7E2P | olfactory receptor family 7... | NR_045004.1 | 45% | (many diffs) | |
| 2 | human | 79315 | OR7E91P | olfactory receptor family 7... | NR_002185.3 | 39.8% | 1_402del;417C>G;904_1255del | |
| 3 | human | 219445 | OR7E5P | olfactory receptor family 7... | NR_027688.2 | 24.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 567
- ORF length:
- 501
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CTTCTTCCTG TCCAACCTGT GCTGGGCTGA CATCGGTTTC ACCTCGGCCA 121 CGGTTCCCAA GATGATTGTG GACATGCGGT CGCATAGCGG AGTCATCTCT TATGCGGACT 181 GCCTGACACG GATGTCTTTC TTGGTCCTTT TTGCATGTGT AGAAGACATG CTCCTGACTG 241 TGATGGCCTA TGACTGTTTT GTAGCCATCT GTCGCCCTCT GCACTACCCA GTCATCGTGA 301 ATCCTCACCT CTGTGTCTTC TTAGTTTCGG TGTCCTTTTC CTTAGCCTGT TGGATTCCCA 361 GCTGCGCAGT TGGATTGTGT TGCAATTCAC CTTCTTCAAG AATGTGGAAA TCTCTAATTT 421 TGTCTGTGAC CCATCTCAAC CTCTCAAGCT TGCCTGTTCT GACAGCATCA TCGATAGCAT 481 GTTCATATAT TTCGATAGTA CTATGTTTGG TTTTCTTCCC ATTTCAGGGA TCCTTTTGTC 541 TTACTATAAA ATTGTCCCCT CCATTCTACC CAACTTTCTT GTACAAAGTt ggcattataa 601 gaaagcattg cttatcaatt tgttgcaacg aac