Construct: ORF ccsbBroadEn_10595
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018324.1_s300c1, BRDN0000455190
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00523 (283601)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283601 | LINC00523 | long intergenic non-protein... | NR_024096.1 | 19.3% | 1_713del;1029_1627del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 384
- ORF length:
- 315
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGCATAGGT ACTGGGCACA CCTCGATGAA CAAGGGAGGT AAGGATGTGA 121 CTCTCCTAGA ACTTTCTGTC GAGAAGAGGA GATGGAGAAT AAACATGGAA ACAAGCAAGA 181 TCATTCTGGA GAAAATGCAA TCAGATGATG TGCTAGATGG TAACAGAGAG AGGTCGAATG 241 AGAGAGAGGG CCGTGACAGC CTCTCTGAGA AGCTGAAATC CAAGCAGAAC CTGAAAGACG 301 AGGAGAAACT CAGATACATA AAGACTGGGA AAAGCATTCA AGTAGAGGGA ACAGTGCGTG 361 CAAAGGCCCT GAGGTGGGTG CAGTTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa 421 agcattgctt atcaatttgt tgcaacgaac