Construct: ORF ccsbBroadEn_10629
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011827.1_s300c1, BRDN0000394311
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00898 (400932)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 400932 | LINC00898 | long intergenic non-protein... | NR_033377.1 | 12.4% | 1_2138del;2328C>A;2661_4185del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 591
- ORF length:
- 522
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGCCTTGCA GGTTTCACCA AGCAAGAGCG GAGAAGACAC AGGCTGGACA 121 AAGGAAGGTG GACGGGACAG CCAGCCGTGC AGCAGCCTCA CAGGACACAG CTACCAGACA 181 GAGAGCACCA GCTGACACTC ATTCCTCCAG CACCAGGAAA TGCCACAGCA GAAGAGAGTC 241 TTCAAGATGG GCCAGACACA CTTCTGCAGC ATGGTTGCTG GGAGCCTGCA CAGGCCAGGC 301 ATTTCTCTAC AGGTGCAATT GAGAACTCAC TGAGGCAAAA GGGCCTTTGT CAACCCACAG 361 AAGTGACAAG TCCAAGTGCA GACCAGGCTT CAGGTCCAGT TGCTCTTCAG AACTCAAAAT 421 CCCATCTCTG CAGGTCTCAG CCAATCCTGC TCCCGCCTGT TTTTATTTCC TGCCCAGAGC 481 AAGTACAGAA CCGAGGGCCA TCGATGGGCG AGAAATCACT GTGCCTCCAA GCTGTATTTT 541 TCACCGTAAC AAGTCATTAC TTCTGTGCCC GGAGTCATTT CTCAGGATCT TTGCCAACTT 601 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac