Construct: ORF ccsbBroadEn_10643
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016922.1_s300c1, BRDN0000393431
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC440700 (440700)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440700 | LOC440700 | carbonic anhydrase 14 pseud... | NR_036683.1 | 12.2% | 1_312del;322C>N;463_1216del | |
| 2 | human | 101928080 | LOC101928080 | uncharacterized LOC101928080 | XR_930620.2 | 6.7% | (many diffs) | |
| 3 | human | 101928080 | LOC101928080 | uncharacterized LOC101928080 | XR_930619.2 | 6.5% | (many diffs) | |
| 4 | human | 154214 | RNF217 | ring finger protein 217 | XR_001743180.2 | 4.9% | (many diffs) | |
| 5 | human | 107984660 | LOC107984660 | uncharacterized LOC107984660 | XR_001750645.1 | 4.2% | (many diffs) | |
| 6 | human | 23357 | ANGEL1 | angel homolog 1 | NM_001370748.1 | 3.5% | 3% | (many diffs) |
| 7 | human | 107984660 | LOC107984660 | uncharacterized LOC107984660 | XR_001750646.1 | 3.4% | (many diffs) | |
| 8 | human | 23357 | ANGEL1 | angel homolog 1 | NM_001370746.1 | 3.2% | 2.8% | (many diffs) |
| 9 | human | 107984660 | LOC107984660 | uncharacterized LOC107984660 | XR_001750641.1 | 3.2% | (many diffs) | |
| 10 | human | 105372107 | LOC105372107 | uncharacterized LOC105372107 | XR_002958223.1 | 1.9% | (many diffs) | |
| 11 | human | 105372107 | LOC105372107 | uncharacterized LOC105372107 | XR_002959042.1 | 1.9% | (many diffs) | |
| 12 | human | 6569 | SLC34A1 | solute carrier family 34 me... | XR_941113.2 | 1.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 216
- ORF length:
- 150
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG GTGGNTCACA CCTGTAATCC CAGCACTTTG GGAGGCGGAG GTGGGTGGAT 121 TGCCTGAGCT CAGGAGTTCC AGACCAGCCT GGACAACATG GTGGACTTTC CAGAAAATAT 181 GTAGCTACCC AGCTACACCT GCACTGGGGT CAGGATGCCC AACTTTCTTG TACAAAGTtg 241 gcattataag aaagcattgc ttatcaattt gttgcaacga ac