Construct: ORF ccsbBroadEn_10648
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007066.1_s300c1, BRDN0000398052
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNRF2P1 (441208)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100271874 | ZNRF2P2 | zinc and ring finger 2 pseu... | NR_027347.1 | 37.5% | (many diffs) | |
| 2 | human | 223082 | ZNRF2 | zinc and ring finger 2 | XR_926925.2 | 32.3% | (many diffs) | |
| 3 | human | 441208 | ZNRF2P1 | zinc and ring finger 2 pseu... | NR_003502.2 | 19.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 474
- ORF length:
- 405
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGCACCGA AACCAGCGGC AGTCGCACGG CCACCTGAGT CGCCCCTTCC 121 TGCTGGAGCC AGCGAGGGGT GCCTGCAGCC GGGACACCTT CCTCTCCGCG TCTCCTCGTC 181 TCCCGCGCCC GCGTCAGGCC GCCAGCCTTG CCCACCGCCC CGAGAAGAGC GCGCCGGGCG 241 CCGACTGCCC CTCGGGGCGC CGAGCGGAGG CCCTGGAAGT GCGGGGGCCT CTCTGGGCCG 301 GCCGCGGCGC CTCGGCCCTG CCCTCTAGCT CCCGCGTTCG CTCCTACCCT CTTGGCTCTC 361 GGGGCACAGC GCGCGGCCCG GTCCGGAGCA GGGCGGACAT GAGCGCCAGG CAGAGCGGCC 421 TGGCCGCCGC TAACGGCGCA CGCGCGCGTA CTCGGCTCGG ATCTACCTTC CAGTTGCCAA 481 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac