Construct: ORF ccsbBroadEn_10943
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015057.1_s300c1, BRDN0000393360
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LAMC1 (3915)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3915 | LAMC1 | laminin subunit gamma 1 | NM_002293.4 | 2.3% | .6% | 1_3706del;3821_4827del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 180
- ORF length:
- 114
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CAAGCGAAGA ACATCTCACA GGATCTGGAA AAACAAGCTG CCCGAGTACA 121 TGAGGAGGCC AAAAGGGCCG GTGACAAAGC TGTGGAGATC TATGCCAGCG TGGCTCAGCT 181 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 241 acgaac